Digital Pathology Whole Slide Image Analysis Toolbox
☆55Apr 2, 2023Updated 3 years ago
Alternatives and similar repositories for pyslide
Users that are interested in pyslide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 3 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 4 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 5 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 3 years ago
- PAIP2019: Liver Cancer Segmentation☆34Oct 3, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Apr 8, 2021Updated 5 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 3 years ago
- WSICS☆30Apr 19, 2019Updated 7 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- PFA-ScanNet: Pyramidal Feature Aggregation With Synergistic Learning for Breast Cancer Metastasis Analysis (Architecture Only Pytorch Imp…☆21Aug 8, 2019Updated 7 years ago
- A pyqt5 widget for viewing whole-slide images with Openslide☆21Feb 3, 2018Updated 8 years ago
- Tumor classification. TF Slim implementation of Camelyon 16 challenge (WIP)☆22Jan 10, 2021Updated 5 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- This repository contains an implementation of a deep learning Mask R-CNN algorithm for nuclei segmentation from whole slide images of tis…☆18Nov 10, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Whole Slide Images Segmentation using Patch UNet☆17Mar 30, 2020Updated 6 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆166Jul 25, 2024Updated 2 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 6 years ago
- base on MIL method☆13Jul 25, 2024Updated 2 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Aug 9, 2022Updated 4 years ago
- Preprocessing module for large histological images☆23Jun 16, 2023Updated 3 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆519Jun 7, 2024Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆331Sep 16, 2026Updated 3 weeks ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Dec 8, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the official code for the paper Learning Represenations with Contrastive Self-Supervised Learning for Histopathology Applications☆13Aug 17, 2022Updated 4 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆213Mar 7, 2019Updated 7 years ago
- Codes available of a paper: An Efficient Cervical Whole Slide Image Analysis Framework Based on Multi-scale Semantic and Location Deep Fe…☆16Jul 26, 2022Updated 4 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆114Jun 9, 2023Updated 3 years ago
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆18Jun 15, 2023Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆25Oct 19, 2023Updated 2 years ago
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Oct 11, 2020Updated 6 years ago
- Open source whole slide image preparation and viewing pipeline☆14Mar 16, 2020Updated 6 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆18Aug 11, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆132Jun 25, 2019Updated 7 years ago
- 首个临床级别的 AI 系统可用源码☆69Dec 17, 2021Updated 4 years ago
- Pathology image classifier architecture☆13Jan 20, 2020Updated 6 years ago
- Python Whole Slide Image Preprocessing☆303Nov 15, 2022Updated 3 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆81Jul 29, 2025Updated last year
- code related to submission of "Accurate diagnosis of lymphoma on whole slide histopathology images using deep learning"☆10May 12, 2020Updated 6 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 5 years ago