An implementation of Unet for pytorch designed for digital pathology segmentation
☆128Aug 23, 2022Updated 3 years ago
Alternatives and similar repositories for PytorchDigitalPathology
Users that are interested in PytorchDigitalPathology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open-source digital pathology based rapid image annotation tool☆91Jun 22, 2026Updated 3 weeks ago
- HistoQC is an open-source quality control tool for digital pathology slides☆327Apr 13, 2026Updated 3 months ago
- A Python toolkit for pathology image analysis algorithms.☆479Updated this week
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆166Jul 25, 2024Updated last year
- ☆77Dec 16, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 11 months ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆17Jun 15, 2023Updated 3 years ago
- ☆72Sep 23, 2024Updated last year
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆272Dec 23, 2023Updated 2 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 5 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆211Mar 7, 2019Updated 7 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆145Jun 14, 2024Updated 2 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python Whole Slide Image Preprocessing☆303Nov 15, 2022Updated 3 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆514Jun 7, 2024Updated 2 years ago
- Library for Digital Pathology Image Processing☆462Updated this week
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆139Updated this week
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆75Feb 20, 2026Updated 5 months ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 4 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆328Aug 22, 2022Updated 3 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆680Sep 12, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Apr 8, 2021Updated 5 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆46Updated this week
- QuPath - Open-source bioimage analysis for research☆1,405Jul 10, 2026Updated last week
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Jun 25, 2019Updated 7 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Apr 28, 2021Updated 5 years ago
- The colorectal adenoma dataset with image-level labels for weakly supervised learning.☆29Oct 30, 2019Updated 6 years ago
- ☆16Nov 3, 2023Updated 2 years ago
- ☆16Jan 18, 2023Updated 3 years ago
- ☆58Jan 18, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 8 years ago
- Interactive Visualizations course☆11Jul 4, 2025Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆56Jun 20, 2023Updated 3 years ago
- [TMI'2021][ISBI MoNuSAC'2020] 11th place solution to Multi-organ nuclei segmentation and classification challenge.☆32Jun 12, 2021Updated 5 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆55Apr 2, 2023Updated 3 years ago
- The PatchCamelyon (PCam) deep learning classification benchmark.☆525Jan 31, 2024Updated 2 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Jan 9, 2023Updated 3 years ago