The MBatch R package and Docker image are designed to help assess and correct for batch effects.
☆19May 31, 2024Updated 2 years ago
Alternatives and similar repositories for BatchEffectsPackage
Users that are interested in BatchEffectsPackage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- Shiny app for geno-pheno catalog☆11Nov 4, 2022Updated 3 years ago
- ☆10Oct 18, 2021Updated 4 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- bead-based normalization of mass cytometry data☆13May 26, 2018Updated 8 years ago
- A pipeline creation tool using Snakemake☆14Jun 8, 2026Updated 3 weeks ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- R package for comprehensive analysis of NULISAseq proteomic data☆11May 13, 2026Updated last month
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Course Website☆391Jun 1, 2026Updated last month
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- Slides from presentations☆18Jun 2, 2026Updated 3 weeks ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆21Feb 16, 2026Updated 4 months ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆15Nov 22, 2022Updated 3 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆15Jun 19, 2026Updated last week
- ☆13Dec 23, 2013Updated 12 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year
- ☆14May 7, 2022Updated 4 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Using Pubmed data and tf.keras to predict if an ophthalmology paper will make it into a top 15 journal☆10May 4, 2020Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- NGSTools☆16Mar 3, 2017Updated 9 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 11 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 9 years ago
- Python Library for data analysis based on GMQL☆15Dec 1, 2021Updated 4 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 4 years ago
- Programming for Biology Class @ CSHL 2022☆14Oct 4, 2024Updated last year
- ☆17Apr 17, 2024Updated 2 years ago
- ☆14Oct 11, 2019Updated 6 years ago