MD-Anderson-Bioinformatics / BatchEffectsPackageLinks
The MBatch R package and Docker image are designed to help assess and correct for batch effects.
☆16Updated last year
Alternatives and similar repositories for BatchEffectsPackage
Users that are interested in BatchEffectsPackage are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 2 months ago
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- workshop website on readthedocs☆20Updated 2 weeks ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆41Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- ☆28Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- Git repo for CONIPHER tree building☆24Updated 6 months ago
- Differential Gene Correlation Analysis☆47Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- ☆47Updated 9 months ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 5 months ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- RNA editing tests☆17Updated 5 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago