shuzhao-li-lab / PythonCentricPipelineForMetabolomicsLinks
Python pipeline for metabolomics data preprocessing, QC, standardization and annotation
☆15Updated last week
Alternatives and similar repositories for PythonCentricPipelineForMetabolomics
Users that are interested in PythonCentricPipelineForMetabolomics are comparing it to the libraries listed below
Sorting:
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆22Updated 9 months ago
- The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …☆13Updated 2 weeks ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆12Updated 3 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆23Updated 8 months ago
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Updated last year
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆24Updated last year
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Updated 2 years ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆18Updated 10 months ago
- Spectral entropy for mass spectrometry data.☆30Updated 3 weeks ago
- openAPI (swagger-condegen) based libraries for different programming languages like R, Python and Ruby☆15Updated last week
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆14Updated 2 years ago
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Updated 4 months ago
- Realtime quality control for mass spectrometry data acquisition☆18Updated 10 months ago
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Updated last year
- ☆20Updated 2 years ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Updated last year
- ☆11Updated last year
- Molecular formula discovery via bottom-up MS/MS interrogation☆14Updated 11 months ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Updated 3 years ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆33Updated 4 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Updated 2 years ago
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Updated 5 months ago
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆28Updated last year
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆28Updated 2 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆46Updated 3 months ago
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆18Updated 2 years ago
- ☆15Updated 4 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆30Updated last month