Python pipeline for metabolomics data preprocessing, QC, standardization and annotation
☆16Mar 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for PythonCentricPipelineForMetabolomics
Users that are interested in PythonCentricPipelineForMetabolomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- asari, metabolomics data preprocessing☆60Mar 21, 2026Updated 3 weeks ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Nov 11, 2024Updated last year
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Mar 12, 2026Updated last month
- A python client for the ClassyFire API☆17May 7, 2020Updated 5 years ago
- ☆11Feb 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- deep learning based prediction of structures and functional groups from MS/MS spectra☆13Jan 31, 2025Updated last year
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 2 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆28Aug 16, 2023Updated 2 years ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆47Jun 23, 2025Updated 9 months ago
- ☆11Mar 31, 2026Updated 2 weeks ago
- ☆29Feb 9, 2024Updated 2 years ago
- Nextflow-powered MS-DIAL☆13Mar 26, 2026Updated 2 weeks ago
- ☆16Jul 20, 2022Updated 3 years ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆22Aug 30, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A small library to provide peak picking for software processing mass spectrometry data☆23Dec 3, 2024Updated last year
- The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …☆13Nov 21, 2025Updated 4 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆33Jan 29, 2026Updated 2 months ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆23Oct 13, 2025Updated 6 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆61Jul 13, 2024Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆31Jan 5, 2025Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆34Aug 19, 2021Updated 4 years ago
- ☆16Apr 7, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28May 25, 2023Updated 2 years ago
- R Interface to the Metabolights REST API☆11Aug 19, 2025Updated 7 months ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 4 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 4 years ago
- Retip - Retention Time prediction for metabolomics☆31Jun 6, 2024Updated last year
- ☆11Feb 20, 2026Updated last month
- ☆28Nov 30, 2023Updated 2 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Realtime quality control for mass spectrometry data acquisition☆21Apr 2, 2026Updated last week
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆51Updated this week
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆15Jun 1, 2023Updated 2 years ago
- A programmable and modular LC/MS simulator in Python☆24Feb 11, 2026Updated 2 months ago
- ☆26Mar 20, 2026Updated 3 weeks ago
- Python library for large-scale targeted metabolomics.☆23Mar 2, 2026Updated last month