Python pipeline for metabolomics data preprocessing, QC, standardization and annotation
☆20Sep 30, 2026Updated last week
Alternatives and similar repositories for PythonCentricPipelineForMetabolomics
Users that are interested in PythonCentricPipelineForMetabolomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- asari, metabolomics data preprocessing☆69Sep 28, 2026Updated 2 weeks ago
- ☆12Feb 20, 2026Updated 7 months ago
- Trends in Computational Metabolomics (2021–2025)☆53Sep 9, 2026Updated last month
- A python client for the ClassyFire API☆17May 7, 2020Updated 6 years ago
- ☆17Jul 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆23Nov 11, 2024Updated last year
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆47Jun 12, 2026Updated 4 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆29Aug 16, 2023Updated 3 years ago
- Realtime quality control for mass spectrometry data acquisition☆22May 19, 2026Updated 4 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28May 25, 2023Updated 3 years ago
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Mar 12, 2026Updated 7 months ago
- ☆12Feb 5, 2024Updated 2 years ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 3 years ago
- deep learning based prediction of structures and functional groups from MS/MS spectra☆13Jan 31, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Jul 12, 2023Updated 3 years ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- ☆30Aug 25, 2026Updated last month
- ☆11Apr 25, 2026Updated 5 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 4 months ago
- ☆30Feb 9, 2024Updated 2 years ago
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Feb 28, 2026Updated 7 months ago
- Nextflow-powered MS-DIAL☆15May 30, 2026Updated 4 months ago
- The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …☆15Aug 25, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A small library to provide peak picking for software processing mass spectrometry data☆24Apr 17, 2026Updated 5 months ago
- G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics☆18Mar 9, 2024Updated 2 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 5 years ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 4 years ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 5 years ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- ☆21Sep 7, 2026Updated last month
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆24Aug 12, 2026Updated 2 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆170Aug 25, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆52Jun 23, 2025Updated last year
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆17Sep 16, 2026Updated 3 weeks ago
- Retip - Retention Time prediction for metabolomics☆33Jun 6, 2024Updated 2 years ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 4 months ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 5 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆63Jul 13, 2024Updated 2 years ago