Alternatives and similar repositories for MSIWarp:

Users that are interested in MSIWarp are comparing it to the libraries listed below

• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆30Updated 8 months ago
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆71Updated 3 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆64Updated this week
• gtluu / timsconvert
  ☆34Updated this week
• MannLabs / alphadia
  modular & open DIA search
  ☆57Updated this week
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆32Updated 2 months ago
• LaRoccaRaphael / MSI_recalibration
  Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data
  ☆11Updated 3 years ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆43Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• XiaoyangSu / AccuCor
  ☆16Updated 5 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆78Updated last week
• kusterlab / universal_spectrum_explorer
  ☆14Updated 2 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆39Updated 7 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated last month
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 3 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated this week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆44Updated last month
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆82Updated last month
• mafreitas / tdf2mzml
  ☆25Updated last year
• HUPO-PSI / psi-ms-CV
  HUPO-PSI mass spectrometry CV
  ☆28Updated this week
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆33Updated this week
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆23Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated this week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated 4 months ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 3 months ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated last month
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆46Updated last month
• MannLabs / pydiaid
  An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…
  ☆19Updated last month