Alternatives and similar repositories for Icarust

Users that are interested in Icarust are comparing it to the libraries listed below

• lh3 / ropebwt3
  BWT construction and search
  ☆116Updated last month
• GeneDx / pgr-tk
  ☆100Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆79Updated 3 weeks ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆68Updated last week
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆120Updated last month
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆99Updated 4 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 3 years ago
• pangenome / impg
  implicit pangenome graph
  ☆67Updated 3 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 4 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 4 months ago
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆54Updated last year
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆32Updated this week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated 5 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆88Updated this week
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆120Updated 7 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆80Updated 4 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated last month
• epi2me-labs / wf-basecalling
  ☆44Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated 3 weeks ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated this week
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 2 months ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆40Updated 3 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆128Updated this week
• kjenike / panagram
  ☆65Updated last week
• skovaka / uncalled4
  ☆74Updated 7 months ago