A fully featured MinKNOW simulator for testing read until experiments.
☆25Apr 28, 2025Updated last year
Alternatives and similar repositories for Icarust
Users that are interested in Icarust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic, adaptive sampling during nanopore sequencing☆39Jan 28, 2026Updated 4 months ago
- a tool for simulating nanopore raw signal data☆78Mar 4, 2026Updated 3 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆15May 14, 2026Updated 3 weeks ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆197Feb 25, 2026Updated 3 months ago
- ☆15Dec 11, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jul 3, 2022Updated 3 years ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated last month
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆23Aug 22, 2025Updated 9 months ago
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆18Apr 21, 2018Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆41Sep 17, 2025Updated 8 months ago
- ☆17Feb 11, 2026Updated 3 months ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Mar 5, 2023Updated 3 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Search and explore genomic metadata, Earth BioGenome Project progress and assembly features☆23May 29, 2026Updated last week
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- ☆11Jan 24, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pan-Genomic Matching Statistics☆57Apr 3, 2024Updated 2 years ago
- Example of using JupyterHub with JupyterLab RTC☆11Dec 17, 2021Updated 4 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆69Jan 1, 2026Updated 5 months ago
- ☆10Jul 23, 2020Updated 5 years ago
- Master of Pores 2☆23Dec 4, 2024Updated last year
- fastest GTF/GFF-to-BED converter chilling around☆32Mar 19, 2026Updated 2 months ago
- A finer way to render 3D objects in {grid} using affine transformations☆11May 17, 2026Updated 3 weeks ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Concurrency algorithms☆13Apr 7, 2025Updated last year
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated 2 years ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 4 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆43Feb 17, 2026Updated 3 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆63Mar 25, 2026Updated 2 months ago
- a comparative genome browser for bacteriophages☆21Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated last month