LooseLab / Icarust
A fully featured MinKNOW simulator for testing read until experiments.
☆17Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for Icarust
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆33Updated 2 months ago
- ☆27Updated 11 months ago
- A versatile toolkit for k-mers with taxonomic information☆76Updated 3 months ago
- De novo clustering of long transcript reads into genes☆48Updated 3 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- python plotly Circos from VCF☆31Updated 5 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Recombination-free trees☆56Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- ☆30Updated 6 months ago
- ☆46Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆48Updated 5 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆37Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆38Updated 3 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆34Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago