Alternatives and similar repositories for Icarust

Users that are interested in Icarust are comparing it to the libraries listed below

• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆39Updated 2 months ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated 2 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated last month
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆34Updated 2 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆78Updated 10 months ago
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆54Updated last year
• pierrepeterlongo / back_to_sequences
  ☆42Updated this week
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆38Updated 3 months ago
• dayzerodx / counterr
  ☆31Updated last year
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 11 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated 3 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆19Updated 5 months ago
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆20Updated 2 weeks ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated last week
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated 2 weeks ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 5 months ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆38Updated last year
• epi2me-labs / wf-alignment
  ☆28Updated last month
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 8 months ago
• broadinstitute / GATK-for-Microbes
  ☆28Updated 3 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated last week