abelavit / PepCNN
☆21Updated last year
Alternatives and similar repositories for PepCNN:
Users that are interested in PepCNN are comparing it to the libraries listed below
- ☆37Updated 3 months ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- ☆49Updated 2 weeks ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆39Updated 2 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- Graph Network for protein-protein interface including language model features☆30Updated last year
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆19Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- Tools for annotation, processing and ML for antibody sequences☆27Updated 3 weeks ago
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 10 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- ☆77Updated last month
- predict stability change upon mutation☆27Updated 9 months ago
- Inference code for Bio-Inspired Antibody Language Model☆24Updated 7 months ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 9 months ago
- Repo contains source code of the SurfaceID paper☆22Updated last year
- ☆19Updated 10 months ago
- ☆65Updated 3 weeks ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆46Updated 4 months ago
- ☆45Updated last year
- Official Implementation of CompassDock☆18Updated 6 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆23Updated 2 years ago
- Fragment binding prediction with ColabFold☆33Updated 3 weeks ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆22Updated last year