LengerichLab / context-review
☆11Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for context-review
- An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.☆67Updated 2 weeks ago
- Models and datasets for perturbational single-cell omics☆143Updated 2 years ago
- Benchmarks for classification of genomic sequences☆119Updated 9 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆321Updated this week
- ☆56Updated last year
- A generative latent variable model for biological sequence families.☆210Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆55Updated 6 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆118Updated 3 weeks ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆210Updated 3 months ago
- CpG Transformer for imputation of single-cell methylomes☆37Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆157Updated 8 months ago
- This repository contains the python package for Helical☆65Updated this week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆176Updated last year
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆71Updated last year
- ☆178Updated 8 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆104Updated 3 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆55Updated last year
- Language modeling of viral evolution☆137Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆58Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆96Updated 3 weeks ago
- Kipoi's model zoo API☆234Updated 6 months ago
- Deep networks for protein functional inference☆163Updated 3 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆109Updated 2 months ago
- ☆34Updated 3 years ago
- Paper collection for single cell foundation models☆27Updated 8 months ago
- Fitness landscape exploration sandbox for biological sequence design.☆156Updated last year
- Biological sequence analysis for the modern age.☆192Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆163Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆226Updated this week
- Genomic Pre-trained Network☆191Updated last month