Minys233 / DynaformerLinks
☆30Updated last year
Alternatives and similar repositories for Dynaformer
Users that are interested in Dynaformer are comparing it to the libraries listed below
Sorting:
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆44Updated 9 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- Benchmarking code accompanying the release of `bioemu`☆41Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆46Updated 7 months ago
- ☆26Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆48Updated 2 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning☆30Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆31Updated 3 weeks ago
- Autoregressive fragment-based diffusion for target-aware ligand design☆29Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆44Updated 2 years ago
- A benchmark for 3D biomolecular structure prediction models☆64Updated 3 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆66Updated 5 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆38Updated 2 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆47Updated last week
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Updated last year
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆12Updated 2 years ago
- ☆19Updated 10 months ago
- ☆12Updated 8 months ago
- ☆38Updated 11 months ago
- Fast and accurate molecular docking with an AI pose scoring function☆41Updated last year
- ☆48Updated 7 months ago
- InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…☆32Updated 4 years ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆11Updated last year
- ☆32Updated 2 years ago
- PoseX: A Molecular Docking Benchmark☆47Updated last month
- Kinase–drug binding prediction with calibrated uncertainty quantification☆23Updated last year