☆34Jun 29, 2024Updated last year
Alternatives and similar repositories for Dynaformer
Users that are interested in Dynaformer are comparing it to the libraries listed below
Sorting:
- Benchmarking code accompanying the release of `bioemu`☆54Nov 25, 2025Updated 3 months ago
- ☆14Jan 5, 2024Updated 2 years ago
- This is the official implementation of the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via React…☆20Sep 28, 2024Updated last year
- ☆65Jun 14, 2025Updated 8 months ago
- ☆20Oct 3, 2024Updated last year
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆21Aug 8, 2024Updated last year
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- ☆40Sep 17, 2024Updated last year
- ☆41Mar 26, 2025Updated 11 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆62Jun 17, 2024Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆105Apr 28, 2025Updated 10 months ago
- ☆37Jan 8, 2021Updated 5 years ago
- Adding hydrogens to molecular models☆57Nov 24, 2025Updated 3 months ago
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆37Jun 4, 2025Updated 9 months ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 5 years ago
- [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions☆43Mar 10, 2025Updated 11 months ago
- ☆11Oct 15, 2023Updated 2 years ago
- ☆12Nov 16, 2023Updated 2 years ago
- pytorch implementation of trDesign☆44Mar 19, 2021Updated 4 years ago
- VCWorld: A Biological World Model for Virtual Cell Simulation☆31Feb 7, 2026Updated 3 weeks ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- ☆26May 9, 2022Updated 3 years ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆57Dec 16, 2025Updated 2 months ago
- RNA Multiple Sequence Alignment☆48Jul 20, 2023Updated 2 years ago
- ☆25Apr 26, 2023Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last week
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- ☆15Jul 21, 2025Updated 7 months ago
- Water Network-Augmented Two-State model for Protein−Ligand Binding Affinity Prediction☆12Jun 10, 2023Updated 2 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- [Neurips 2025] Official Implementation of ConfRover models☆20Feb 3, 2026Updated last month
- ☆15Jul 14, 2025Updated 7 months ago
- ☆15Feb 18, 2025Updated last year
- A python tool for numerically encoding protein sequences based on PSSM profile☆13Jun 25, 2021Updated 4 years ago
- DyNoPy☆11Sep 5, 2024Updated last year
- A deep learning framework for deubiquitnase-substrate interaction identification☆12Jul 31, 2025Updated 7 months ago
- Source code for paper "MolSHAP: Interpreting Structure-Activity Relationships for Compound Optimization"☆24Aug 17, 2023Updated 2 years ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆14Dec 21, 2025Updated 2 months ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago