LQYoLH / CnnCrispr
A deep learning method for sgRNA off-target propensity prediction.
☆14Updated 4 years ago
Alternatives and similar repositories for CnnCrispr:
Users that are interested in CnnCrispr are comparing it to the libraries listed below
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 9 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆26Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 11 months ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 2 weeks ago
- Read, parse and operate different multiple input file formats with OpenVariant☆12Updated 2 months ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 2 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆27Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated this week
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 7 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 6 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 3 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆46Updated last month
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆16Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 9 months ago
- visual analysis of your VCF files☆31Updated 2 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 8 months ago
- alternative splicing analysis pipeline☆18Updated 3 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- Sentieon DNAscope + Machine Learning Model☆12Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 years ago
- Long read to rMATS☆31Updated last year
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆25Updated 3 years ago
- ☆33Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- A library for counting small kmer frequencies in nucleotide sequences.☆24Updated 3 months ago