zhangchonglab / sgRNA-cleavage-activity-prediction
Using our experimental screening dataset, we trained machine learning models to predict sgRNA activity.
☆11Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for sgRNA-cleavage-activity-prediction
- software for the analysis and visualization of deep mutational scanning data☆32Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆35Updated 3 weeks ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆31Updated last year
- Analysis of antibody NGS data☆12Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆86Updated 2 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆20Updated 4 months ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 3 weeks ago
- off-targeting assessment of Cas9 gRNAs☆12Updated 3 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆20Updated 7 months ago
- DRUGZ software☆22Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 8 years ago
- Public repository for ShapeMapper 2 releases☆30Updated 9 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- Core code for the DeepHF prediction tool☆35Updated 5 years ago
- small rna-seq analysis package☆29Updated 2 years ago
- A Pure-Python parser of HMMER3 output☆17Updated last month
- Package to Score Sequences using Rule Set 3☆10Updated 8 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- Python Implementation of Codon Adaption Index☆34Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆37Updated 5 years ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- HLA-II ligand predictor.☆35Updated last year
- ☆19Updated 6 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆25Updated 4 months ago
- Making bioinformatics fun again☆60Updated 5 months ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Updated last month
- iCodon customizes gene expression based on the codon composition☆13Updated last year