Alternatives and similar repositories for sgRNA-cleavage-activity-prediction:

Users that are interested in sgRNA-cleavage-activity-prediction are comparing it to the libraries listed below

• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆22Updated 8 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 8 months ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆41Updated 8 years ago
• crisprVerse / crisprDesign
  Comprehensive design of CRISPR gRNAs for nucleases and base editors
  ☆20Updated 6 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆14Updated last year
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆18Updated 3 months ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆40Updated this week
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆33Updated 2 years ago
• epi2me-labs / wf-clone-validation
  ☆28Updated this week
• dmnfarrell / smallrnaseq
  small rna-seq analysis package
  ☆29Updated 2 years ago
• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆32Updated last year
• dayzerodx / counterr
  ☆31Updated 8 months ago
• aquaskyline / SOAPdenovo-Trans
  SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…
  ☆34Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated last week
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated 5 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆77Updated last year
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆16Updated 3 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• PengNi / deepsignal2
  ☆28Updated last year
• tseemann / PEAR
  Pair-End AssembeR
  ☆29Updated 10 years ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 3 years ago
• nanoporetech / bwapy
  Python bindings to bwa mem
  ☆32Updated 4 years ago
• Chokyotager / ORFFinder
  ORFFinder in Python
  ☆16Updated 4 months ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 3 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆88Updated 2 years ago
• infspiredBAT / Circoletto
  visualising sequence similarity with Circos
  ☆39Updated 5 years ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 10 months ago
• eturro / mmseq
  Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
  ☆67Updated 10 months ago