Alternatives and similar repositories for BindingSitesFromFragments

Users that are interested in BindingSitesFromFragments are comparing it to the libraries listed below

• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• Hoecker-Lab / pocketoptimizer
  Binding pocket optimization based on force fields and docking scoring functions
  ☆37Updated 9 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆40Updated 6 months ago
• Kortemme-Lab / protein_feature_analysis
  ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.
  ☆13Updated 5 years ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 4 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated 7 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆58Updated 7 months ago
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated last year
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 3 weeks ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 6 months ago
• LPDI-EPFL / RosettaSurf
  ☆15Updated 4 years ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 10 months ago
• ld139 / ApoDock_public
  Code for ApoDock
  ☆21Updated 9 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated last year
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated last month
• Furman-Lab / PatchMAN
  ☆27Updated 3 weeks ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• ibmm-unibe-ch / glycosylator
  A Python framework for the rapid modeling of glycans
  ☆18Updated 2 months ago
• Vfold-RNA / RLDOCK
  ☆33Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆36Updated 2 years ago
• nekitmm / DLPacker
  DLPacker
  ☆32Updated last year
• bwicky / SAPP_DMX
  ☆26Updated 4 months ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated 11 months ago
• Kortemme-Lab / match_ligand_binding_sites
  Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.
  ☆12Updated 5 years ago
• xuhuihuang / featuredock
  FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer
  ☆38Updated last year
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• FTD007 / PInet
  ☆25Updated 3 years ago
• drorlab / FRAME
  Fragment-based Molecular Expansion
  ☆27Updated last year