jaaamessszzz / BindingSitesFromFragmentsLinks
De novo design of small molecule binding sites into proteins
☆12Updated 4 years ago
Alternatives and similar repositories for BindingSitesFromFragments
Users that are interested in BindingSitesFromFragments are comparing it to the libraries listed below
Sorting:
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 7 months ago
- ☆15Updated 4 years ago
- Modelling protein conformational landscape with Alphafold☆53Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆54Updated 4 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆37Updated 4 months ago
- ☆20Updated 3 years ago
- A Python framework for the rapid modeling of glycans☆17Updated 8 months ago
- ☆27Updated 2 weeks ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆28Updated 3 weeks ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆44Updated 2 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆21Updated 7 months ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Binding pocket optimization based on force fields and docking scoring functions☆34Updated 6 months ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆23Updated last year
- ☆35Updated 2 years ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated last week
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Updated last year
- development repository for PyInteraph2☆23Updated 6 months ago
- An open-source library for the analysis of protein interactions.☆32Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 4 months ago
- ☆13Updated 2 years ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- Analysis of contacts in molecular dynamics trajectories☆43Updated 5 years ago
- DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…☆16Updated 2 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆15Updated 2 weeks ago
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆14Updated 2 years ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year