Alternatives and similar repositories for BindingSitesFromFragments

Users that are interested in BindingSitesFromFragments are comparing it to the libraries listed below

• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 6 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated 5 months ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆26Updated 3 years ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆15Updated 3 months ago
• Kortemme-Lab / match_ligand_binding_sites
  Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.
  ☆11Updated 4 years ago
• JosePereiraUA / rosetta-scripts
  Some Rosetta Scripts that allow for various simple tasks
  ☆14Updated 5 years ago
• bwicky / oligomer_hallucination
  ☆35Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• Furman-Lab / PatchMAN
  ☆26Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 7 months ago
• Vfold-RNA / RLDOCK
  ☆33Updated last year
• Sanofi-Public / LMR-SurfaceID
  Repo contains source code of the SurfaceID paper
  ☆23Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆23Updated last year
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆27Updated 4 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated 8 months ago
• LPDI-EPFL / RosettaSurf
  ☆13Updated 4 years ago
• atommoyer / stapler
  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins
  ☆19Updated last year
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆26Updated last month
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 4 months ago
• ak422 / DDAffinity
  ☆20Updated last month
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 10 months ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆30Updated 2 years ago
• ld139 / ApoDock_public
  Code for ApoDock
  ☆20Updated 2 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 2 weeks ago
• stemylonas / DeepSurf
  A surface-based deep learning approach for the prediction of ligand binding sites on proteins
  ☆43Updated 2 years ago
• masoudk / AsiteDesign
  ☆13Updated last year