Kortemme-Lab / ddgLinks
A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.
☆17Updated 9 years ago
Alternatives and similar repositories for ddg
Users that are interested in ddg are comparing it to the libraries listed below
Sorting:
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆42Updated 2 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 6 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- Physical energy function for protein sequence design☆30Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Modeling the effects of mutations in proteins using PyRosetta☆25Updated 7 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors☆20Updated 6 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆35Updated 3 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- Docking Tool Benchmarking Workflow☆24Updated 10 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- ☆30Updated 3 weeks ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated last week
- ☆34Updated 3 years ago
- ☆19Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- ☆13Updated 7 years ago
- Humanness of de-novo designed proteins☆11Updated 2 weeks ago
- ☆19Updated last year
- ☆26Updated 3 weeks ago
- ☆32Updated last year
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago