Kortemme-Lab / ddgLinks
A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.
☆17Updated 9 years ago
Alternatives and similar repositories for ddg
Users that are interested in ddg are comparing it to the libraries listed below
Sorting:
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- Protein-protein binding affinity benchmark☆16Updated 9 months ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- ☆30Updated 6 months ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Updated 3 years ago
- ☆35Updated 4 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 4 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 3 years ago
- ☆13Updated 8 years ago
- Humanness of de-novo designed proteins☆31Updated 6 months ago
- Some scripts that I keep using over and over.☆20Updated 4 months ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆43Updated 2 years ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 2 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors☆20Updated last year
- Modeling the effects of mutations in proteins using PyRosetta☆27Updated 7 years ago
- Spatiotemporal identification of druggable binding sites using deep learning☆22Updated 4 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- PCA and normal mode analysis of proteins☆18Updated last year
- Docking Tool Benchmarking Workflow☆24Updated last year
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆35Updated 4 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Updated 6 years ago
- dMaSIF implementation for google colab☆34Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ☆23Updated 4 years ago
- Automated construction of protein chimeras and their analysis.☆15Updated 2 years ago
- ☆20Updated 3 years ago