JurgenCox / compbio-base

Related projects: ⓘ

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆47Updated last year
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆26Updated 4 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆40Updated 2 weeks ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆71Updated last week
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆28Updated last month
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆33Updated 3 weeks ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆20Updated 4 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 9 months ago
• IFIproteomics / LFQbench
  ☆24Updated last year
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆19Updated 4 months ago
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆24Updated last month
• tbaccata / amica
  amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
  ☆22Updated last year
• wasimaftab / LIMMA-pipeline-proteomics
  LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment
  ☆25Updated 9 months ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆17Updated 10 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆24Updated this week
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆14Updated 9 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆30Updated last month
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆31Updated 4 months ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆36Updated this week
• symbioticMe / proBatch
  Tools for Batch Effects Diagnostics and Correction
  ☆15Updated last year
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆13Updated 3 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆29Updated 3 weeks ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆33Updated last year
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆20Updated last month
• PYangLab / PhosR
  PhosR is a package for the comprehensive analysis of phosphoproteomic data.
  ☆14Updated 3 weeks ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆83Updated last year
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆42Updated 6 months ago
• wenbostar / metaX
  metaX: a flexible and comprehensive software for processing omics data.
  ☆21Updated last year