Sanofi-Public / Clinical-BERT-ExplainabilityLinks
To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical records that lead to an outcome prediction.
☆12Updated 5 months ago
Alternatives and similar repositories for Clinical-BERT-Explainability
Users that are interested in Clinical-BERT-Explainability are comparing it to the libraries listed below
Sorting:
- Top open source software from the top 50 pharmaceutical companies☆70Updated last year
- The repository contains the data and the codes for the manuscript "Relational graph convolutional networks for predicting blood-brain bar…☆15Updated 7 months ago
- Code and data for the Transformer neural network trained to translate between molecular text representations and create molecular embeddi…☆64Updated 3 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Updated last year
- A multi-model framework for blood-brain barrier permeability discovery☆17Updated 3 years ago
- Methods of druglikeness prediction☆16Updated 3 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 3 years ago
- ☆19Updated last year
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, p…☆141Updated 6 months ago
- BayeshERG Official Repository☆16Updated 7 months ago
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Updated 2 years ago
- Recursion's molecular foundation model☆65Updated 7 months ago
- Don't worry about DrugBank licensing - write code that knows how to download it automatically☆63Updated 11 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆34Updated last year
- ☆12Updated last year
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Updated last year
- CPSign - an open source modeling software made for QSAR, written in Java☆15Updated last year
- ☆50Updated 3 years ago
- MCP server that enables language models to interact with RDKit through natural language☆29Updated 2 weeks ago
- neuropeptide prediction☆13Updated 3 years ago
- DataSAIL is a tool to split datasets while reducing information leakage.☆44Updated 3 weeks ago
- A resource of adverse drug effects extracted from FDA structured product labels☆88Updated 6 months ago
- ☆15Updated 3 years ago
- Site-of-Metabolsim prediction using Graph Neural Networks.☆15Updated 2 years ago
- AutoML system for building trustworthy peptide bioactivity predictors☆36Updated this week
- The code was developed for training diverse ML and DL models to predict PROTACs degradation. Data cleaning for two public datasets, PROTA…☆15Updated 2 years ago
- few-shot compound activity regression☆13Updated last year
- This is The repository for Paper "AttentionSiteDTI: Attention Based Model for Predicting Drug-Target Interaction Using Graph Representati…☆46Updated 2 years ago