TissueImageAnalytics / iguana

Related projects ⓘ

Alternatives and complementary repositories for iguana

• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆33Updated 10 months ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆28Updated 9 months ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆90Updated last year
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆56Updated 2 weeks ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆45Updated 2 years ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆60Updated last year
• DIAGNijmegen / pathology-hooknet
  ☆53Updated last month
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆67Updated last year
• TissueImageAnalytics / TILAb-Score
  This repository contains the implementation of TILAb-score as described in the original paper.
  ☆17Updated 5 years ago
• vqdang / H2T
  ☆36Updated last year
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆18Updated 7 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆31Updated last year
• alexjfoote / reetoolbox
  Toolbox for measuring adversarial robustness to many transforms
  ☆19Updated last year
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆30Updated last month
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆32Updated 3 weeks ago
• KatherLab / preProcessing
  ☆43Updated last year
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆59Updated 3 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆93Updated this week
• wenqi006 / SlideGraph
  ☆49Updated 2 years ago
• DIAGNijmegen / pathology-streaming-pipeline
  Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
  ☆75Updated last year
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆19Updated last year
• wanghao14 / Stain_Normalization
  Some stain normalization code
  ☆85Updated 2 years ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆46Updated last month
• loic-lb / Unsupervised-Nuclei-Segmentation-using-Spatial-Organization-Priors
  Code for the paper Unsupervised Nuclei Segmentation using Spatial Organization Priors.
  ☆11Updated last year
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆42Updated this week
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆51Updated 2 years ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆47Updated 3 months ago
• paip-2019 / challenge
  ☆30Updated 4 years ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆28Updated 2 years ago