HenriquesLab / DeepBacs
☆27Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepBacs
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆70Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- ☆37Updated 3 months ago
- ☆66Updated last week
- Lectures for a napari training course☆50Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆125Updated 2 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆55Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆133Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆94Updated last year
- Automated mitochondrial segmentation and tracking.☆27Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆80Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆127Updated 2 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆33Updated 3 weeks ago
- Cell tracking and segmentation software☆94Updated this week
- StarDist plugin for napari☆36Updated 2 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆61Updated last year
- CellProfiler tutorial pipelines and images☆84Updated 3 weeks ago
- Your Personal Assistant in Computational Bioimaging.☆35Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- Loading and handling microscopy data in blender☆99Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆60Updated 3 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆136Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆61Updated last week
- Open source Python library for building bioimage analysis pipelines☆125Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆63Updated 3 weeks ago
- Track cells and build cell lineages☆28Updated 3 months ago
- ExTrack MLE for diffusive noisy single-particle tracks☆12Updated last month