bigdataviewer / bigdataviewer_fijiLinks
Fiji plugins for starting BigDataViewer and exporting data.
☆22Updated 4 months ago
Alternatives and similar repositories for bigdataviewer_fiji
Users that are interested in bigdataviewer_fiji are comparing it to the libraries listed below
Sorting:
- ImgLib2-based viewer for registered SPIM stacks and more☆41Updated last week
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated last year
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- ☆111Updated 3 weeks ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago
- GPU-accelerated image processing for everyone☆55Updated last year
- The framework for quantification of neuronal anatomy☆55Updated last week
- ImageJ convenience layer for N5☆19Updated 2 months ago
- Tools for distributed alignment of massive images☆91Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 7 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆34Updated last month
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 9 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated 2 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆157Updated last month
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 2 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- Read and write ImageJ ROI format.☆83Updated last week
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Updated last year
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- Running compute-intense parts of BigStitcher distributed☆28Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated last month
- Browse your OMERO database from within napari.☆40Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month