bigdataviewer / bigdataviewer_fiji
Fiji plugins for starting BigDataViewer and exporting data.
☆21Updated 4 months ago
Alternatives and similar repositories for bigdataviewer_fiji:
Users that are interested in bigdataviewer_fiji are comparing it to the libraries listed below
- ImageJ convenience layer for N5☆16Updated this week
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last week
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated 8 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- ImgLib2-based viewer for registered SPIM stacks and more☆38Updated 2 months ago
- Running compute-intense parts of BigStitcher distributed☆22Updated last week
- ImgLib2/BDV implementation of Stitching for large datasets☆69Updated last week
- Generate markdown notebooks from ImageJ Macro☆24Updated 3 years ago
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆12Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ☆38Updated 2 months ago
- Image correction software for chromatic shifts in fluorescence microscopic images☆23Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆24Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated last month
- Lectures for a napari training course☆50Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆38Updated 2 weeks ago
- GPU-accelerated image processing for everyone☆50Updated 7 months ago
- Automated mitochondrial segmentation and tracking.☆30Updated 3 years ago
- 3D/4D volumetric rendering of microscopy data☆21Updated this week
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆60Updated this week
- Browse your OMERO database from within napari.☆35Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆61Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 3 weeks ago
- ☆34Updated 9 months ago
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week