Joint training of denoising and segmentation.
☆76Aug 29, 2023Updated 2 years ago
Alternatives and similar repositories for DenoiSeg
Users that are interested in DenoiSeg are comparing it to the libraries listed below
Sorting:
- This is our implementation of Probabilistic Noise2Void☆77Aug 28, 2023Updated 2 years ago
- Image restoration for fluorescence microscopy☆326Dec 8, 2025Updated 2 months ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- Notebooks for VoidSeg☆17Feb 10, 2020Updated 6 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 10 months ago
- ☆21Sep 9, 2021Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- De novo analysis for cryo-electron tomography☆25Nov 8, 2024Updated last year
- ☆13Aug 7, 2020Updated 5 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated last year
- Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"☆57Aug 28, 2023Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆89Feb 17, 2026Updated last week
- DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains t…☆44Apr 16, 2025Updated 10 months ago
- ☆17Oct 21, 2024Updated last year
- sciview is a tool for visualization and interaction with ND image and mesh data☆72Feb 2, 2026Updated last month
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- Reliable estimation of membrane curvature for cryo-electron tomography☆22Jul 10, 2025Updated 7 months ago
- This is the implementation of Noise2Void training.☆475Dec 18, 2024Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆165Feb 19, 2026Updated last week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆122Updated this week
- This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…☆35Nov 7, 2025Updated 3 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- GPU accelerated image/volume processing in Python☆113Feb 10, 2026Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 4 months ago
- MorphoFeatures code and data☆22May 4, 2023Updated 2 years ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆130Aug 7, 2025Updated 6 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Jan 17, 2026Updated last month
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆93Oct 20, 2024Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 3 months ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated 2 weeks ago
- ☆41Feb 13, 2026Updated 2 weeks ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year
- A graphical user interface (GUI) for PIMS☆11Aug 12, 2020Updated 5 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 3 years ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year