Alternatives and similar repositories for cowpatch

Users that are interested in cowpatch are comparing it to the libraries listed below

• kpj / rwrap
  Seamlessly integrate R packages into Python.
  ☆21Updated 2 years ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆81Updated 2 years ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated last week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 9 months ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated this week
• Gregor-Mendel-Institute / aradeepopsis
  A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
  ☆43Updated 4 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆60Updated 3 months ago
• jokergoo / KeywordsEnrichment
  ☆31Updated last year
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆32Updated 2 months ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆23Updated 5 years ago
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆44Updated last month
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆54Updated 6 years ago
• cxli233 / customized_upset_plots
  Make customized upset plots: from raw data to plots
  ☆61Updated last month
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated 2 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆58Updated 5 months ago
• koonimaru / omniplot
  Statistical analysis, clustering and visualinzing scientific data with hassle free
  ☆25Updated 3 months ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆42Updated last month
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 6 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆45Updated 2 weeks ago
• Bioconductor / GenomeInfoDb
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
  ☆32Updated last week
• cxli233 / ggpathway
  A tutorial for pathway visualization using tidyverse, igraph, and ggraph
  ☆60Updated 11 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 5 months ago
• pachterlab / MCML
  ☆33Updated 4 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 2 weeks ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆50Updated 4 months ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 11 months ago