ibmm-unibe-ch / glycosylatorLinks
A Python framework for the rapid modeling of glycans
☆18Updated 2 months ago
Alternatives and similar repositories for glycosylator
Users that are interested in glycosylator are comparing it to the libraries listed below
Sorting:
- Binding pocket optimization based on force fields and docking scoring functions☆37Updated 9 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 9 months ago
- ☆42Updated 8 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆62Updated 3 weeks ago
- Modelling protein conformational landscape with Alphafold☆54Updated 4 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆44Updated 3 months ago
- Quick mapping of Uniprot sequences to PDB structures☆36Updated 8 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆29Updated last week
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆24Updated last year
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆44Updated last month
- ☆10Updated this week
- ☆25Updated 7 months ago
- Code for running BinderFlow☆54Updated last month
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model☆25Updated last week
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆36Updated last month
- Explicit crosslinks in AlphaFold 3☆23Updated 9 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 weeks ago
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆33Updated last year
- Codes and scripts for "An artificial intelligence accelerated virtual screening platform for drug discovery"☆62Updated last year
- ☆56Updated 9 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆49Updated this week
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 6 months ago
- ☆63Updated 2 months ago
- Extension of ThermoMPNN for double mutant predictions☆49Updated 2 months ago
- ☆29Updated 2 months ago
- Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2☆74Updated 3 weeks ago
- A snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS☆123Updated 3 weeks ago
- bakerlab pymol scripts☆25Updated 5 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated last month