NicolaDM / phastSim
fast sequence evolution simulation for SARS-CoV-2 and similar
☆18Updated 3 weeks ago
Alternatives and similar repositories for phastSim:
Users that are interested in phastSim are comparing it to the libraries listed below
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated 2 weeks ago
- ☆17Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated this week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆28Updated this week
- Evaluating Nanopore-based bacterial variant calling☆16Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Updated 4 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated 8 months ago
- Bacterial GWAS analysis☆36Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated this week
- ☆31Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated 4 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆25Updated 2 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 3 weeks ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Gene-flank analysis tool☆27Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆31Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆35Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago