Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
☆140Jul 15, 2026Updated last month
Alternatives and similar repositories for Apollo
Users that are interested in Apollo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆473Jul 16, 2026Updated last month
- Python programs for processing GFF3 files☆105Jul 29, 2026Updated last month
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- ☆28Jul 18, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Find, circularise and annotate mitogenome from PacBio assemblies☆200May 11, 2025Updated last year
- source code for EVM☆128Nov 29, 2024Updated last year
- Monorepo for Apollo 3 server-side and client-side (JBrowse 2 plugin) components.☆16Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆216Aug 21, 2024Updated 2 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆187Jul 30, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆69Aug 16, 2023Updated 3 years ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 6 years ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated 2 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- Source code for JBrowse 2, a modern React-based genome browser☆293Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Sorting Intolerant From Tolerant For Genomes☆32Nov 3, 2017Updated 8 years ago
- Tool to plot synteny and structural rearrangements between genomes☆354Jul 27, 2026Updated last month
- a tool for inferring species tree from sequencing reads☆161May 19, 2026Updated 3 months ago
- Mummer alignment tool☆574Feb 4, 2025Updated last year
- ☆78Jun 12, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆284Jul 7, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 2 months ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 7 months ago