Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
☆139Mar 11, 2026Updated last month
Alternatives and similar repositories for Apollo
Users that are interested in Apollo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆472Mar 9, 2026Updated last month
- Python programs for processing GFF3 files☆104Dec 15, 2025Updated 4 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- ☆28Apr 21, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated 11 months ago
- source code for EVM☆124Nov 29, 2024Updated last year
- JBrowse 2 plugin for editing annotations on an Apollo server☆15Updated this week
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 10 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆212Aug 21, 2024Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆294Feb 25, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆177Apr 22, 2026Updated last week
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆68Aug 16, 2023Updated 2 years ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- A genome completeness evaluation tool based on miniprot☆239Sep 18, 2025Updated 7 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆535Aug 1, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Source code for JBrowse 2, a modern React-based genome browser☆282Updated this week
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Sorting Intolerant From Tolerant For Genomes☆32Nov 3, 2017Updated 8 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 8 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- a tool for inferring species tree from sequencing reads☆160Dec 9, 2025Updated 4 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆272Mar 15, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆457Apr 12, 2026Updated 3 weeks ago