GMOD / ApolloLinks
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
☆135Updated last week
Alternatives and similar repositories for Apollo
Users that are interested in Apollo are comparing it to the libraries listed below
Sorting:
- Python programs for processing GFF3 files☆98Updated last year
- Hierarchical Alignment Format☆170Updated 5 months ago
- Fast genome analysis from unassembled short reads☆292Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- Population-scale genotyping using pangenome graphs☆185Updated 5 months ago
- A tool to circularize genome assemblies☆242Updated last year
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆283Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆119Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆153Updated 2 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆169Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆232Updated last year
- software tools for haplotype assembly from sequence data☆219Updated 4 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Tools for processing and analyzing structural variants.☆152Updated 3 years ago
- A genome browser designed for complex structural variants and long reads.☆283Updated 3 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆230Updated last month
- NGS Language Bindings☆119Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆188Updated last year
- An overview of all nanopack tools☆257Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆152Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆223Updated last week
- a long read simulator that can imitate many types of read problems☆227Updated 11 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆253Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆191Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆205Updated this week
- IGV Web App☆123Updated last week