Lailabcode / DeepSCMLinks
A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict antibody viscosity.
☆26Updated 2 years ago
Alternatives and similar repositories for DeepSCM
Users that are interested in DeepSCM are comparing it to the libraries listed below
Sorting:
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 10 months ago
- An antibody-specific language model focusing on NGL prediction☆27Updated 9 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆31Updated last month
- Tool for modelling the CDRs of antibodies☆48Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 10 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆40Updated 4 months ago
- ☆19Updated last month
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆57Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆59Updated 3 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- Making Protein folding accessible to all!☆22Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆48Updated 2 weeks ago
- ☆23Updated 2 months ago
- Antibody-specific masked language model☆55Updated last year
- Repo contains source code of the SurfaceID paper☆23Updated last year
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆7Updated last year
- ☆68Updated 4 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆22Updated 2 years ago
- ☆37Updated last week
- ☆45Updated last year
- ☆20Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆34Updated 2 months ago
- ☆25Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated 11 months ago
- Kuhlman Lab Installation of AlphaFold3☆26Updated 3 weeks ago