Alternatives and similar repositories for Biojs.Annotator:

Users that are interested in Biojs.Annotator are comparing it to the libraries listed below

• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆16Updated 8 years ago
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 6 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆31Updated last year
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Updated 8 months ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆41Updated 4 years ago
• ncbi-nlp / ezTag
  Web interface that allows users to perform computer-assisted text annotation
  ☆16Updated 2 years ago
• larsjuhljensen / tagger
  ☆22Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆24Updated 3 years ago
• ncbi / BioConceptVec
  ☆40Updated 4 years ago
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆21Updated 6 months ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆41Updated 3 months ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated 7 months ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 6 years ago
• Knowledge-Graph-Hub / kg-covid-19
  An instance of KG Hub to produce a knowledge graph for COVID-19 response.
  ☆80Updated last year
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆16Updated 3 weeks ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• KerstenDoering / PubMedPortable
  PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…
  ☆25Updated 6 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆39Updated 8 months ago
• calipho-sib / cellosaurus
  A knowledge resource on cell lines - From SIB CALIPHO group
  ☆13Updated last year
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 2 years ago
• CogStack / nlp2phenome
  using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
  ☆10Updated 2 years ago
• dhimmel / disease-ontology
  User-friendly extensions to the Disease Ontology
  ☆20Updated 8 years ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆51Updated last week
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated 7 months ago
• LHNCBC / SemRep
  ☆65Updated 2 years ago
• cambridgeltl / nn_for_LBD
  Repository for paper 'Neural networks for open and closed Literature-based Discovery'
  ☆9Updated 4 years ago
• jakelever / pgxmine
  Text mining for pharmacogenomic associations for PharmGKB
  ☆26Updated 2 years ago
• NCBI-Hackathons / CTEligible
  Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials
  ☆18Updated 6 years ago