ddomingof / PubMed2PDFLinks
A Python package to download full article PDFs from OA publications
☆45Updated 5 months ago
Alternatives and similar repositories for PubMed2PDF
Users that are interested in PubMed2PDF are comparing it to the libraries listed below
Sorting:
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆119Updated last week
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆64Updated last month
- A resource of adverse drug effects extracted from FDA structured product labels☆78Updated this week
- Build PharMeBINet from different sources.☆17Updated 2 months ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆49Updated 6 months ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 4 months ago
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- Batch download articles based on PMID (Pubmed ID)☆124Updated last year
- AIONER☆55Updated 11 months ago
- PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing a…☆41Updated 4 years ago
- a customzable pipeline for information extraction☆17Updated last month
- A Standard Database for Drug Repositioning☆19Updated 7 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆59Updated last month
- 🪝 What's the latest version for each database?☆27Updated this week
- Biomedical Entity Linking Benchmark☆13Updated 6 months ago
- Biomedical Term Annotator☆9Updated 4 months ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆21Updated 4 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆42Updated this week
- The light frontend for BioChatter, in pure Python☆54Updated 2 weeks ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆192Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆116Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated 2 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆88Updated last year
- Template for creating a BioCypher-driven knowledge graph☆12Updated 3 weeks ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year