ddomingof / PubMed2PDF
A Python package to download full article PDFs from OA publications
☆42Updated 3 months ago
Alternatives and similar repositories for PubMed2PDF:
Users that are interested in PubMed2PDF are comparing it to the libraries listed below
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆116Updated 3 months ago
- a customzable pipeline for information extraction☆17Updated 2 months ago
- A resource of adverse drug effects extracted from FDA structured product labels☆77Updated last week
- Biomedical Entity Linking Benchmark☆12Updated 4 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆61Updated last year
- Biomedical Term Annotator☆9Updated 2 months ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆77Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆39Updated this week
- Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine☆53Updated this week
- Build PharMeBINet from different sources.☆16Updated last month
- AIONER☆54Updated 9 months ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last month
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆186Updated last year
- ☆22Updated 2 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆186Updated last year
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- A full-text article retrieval pipeline for biomedical literature.☆20Updated last month
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆11Updated last year
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- Batch download articles based on PMID (Pubmed ID)☆122Updated last year
- Retrieve and process PubTator annotations☆44Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆115Updated 3 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 2 months ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆41Updated 5 years ago
- 🪝 What's the latest version for each database?☆27Updated this week
- a tool for mapping free-text descriptions of entities to ontology terms☆20Updated 9 months ago
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆21Updated 4 years ago
- ☆67Updated 2 years ago