A Python package to download full article PDFs from OA publications
☆54Jan 12, 2025Updated last year
Alternatives and similar repositories for PubMed2PDF
Users that are interested in PubMed2PDF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Apr 27, 2020Updated 6 years ago
- Biomedical Entity Linking Benchmark☆13Dec 10, 2024Updated last year
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆28Jul 1, 2024Updated last year
- Automatic generation of reviews of scientific papers☆30Apr 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Aug 24, 2022Updated 3 years ago
- ☆35Feb 24, 2026Updated 2 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Nov 3, 2021Updated 4 years ago
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆10Jan 9, 2025Updated last year
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated last year
- Drug repositioning based on Heterogeneous network and Text Mining☆14Jun 15, 2021Updated 4 years ago
- ☆18Jan 11, 2024Updated 2 years ago
- Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers☆51Apr 15, 2026Updated 2 weeks ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆43Jul 5, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🪝 What's the latest version for each database?☆29Updated this week
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆16Jan 27, 2025Updated last year
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- An R package for statistics and machine learning with persistence diagrams☆18Oct 28, 2024Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Jul 1, 2024Updated last year
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆34Jul 5, 2024Updated last year
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- ☆18Jan 19, 2026Updated 3 months ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)☆30May 9, 2025Updated 11 months ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆14Jul 28, 2020Updated 5 years ago
- Materials of FutureTDM project☆11Aug 22, 2017Updated 8 years ago
- A multi-model framework for blood-brain barrier permeability discovery☆17Jun 6, 2022Updated 3 years ago
- Control and Automation of Transmission Electron Microscopes☆13Aug 12, 2022Updated 3 years ago
- Using Pubmed data and tf.keras to predict if an ophthalmology paper will make it into a top 15 journal☆10May 4, 2020Updated 6 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- Size-Wise Analysis of Transfer Learning of pLM Embeddings☆12Jun 10, 2025Updated 10 months ago
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learning☆27Dec 15, 2025Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆59Nov 15, 2020Updated 5 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Jun 27, 2024Updated last year
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆23Aug 6, 2025Updated 8 months ago
- 🍪 A cookiecutter package for an enlightened python package☆41Apr 27, 2026Updated last week
- Diffusion model for gene regulatory network inference.☆28Mar 20, 2026Updated last month
- ☆28Aug 29, 2025Updated 8 months ago
- Official code repo for NeurIPS 2025 Spotlight paper, "Debate or Vote: Which Yields Better Decisions in Multi-Agent LLMs?"☆73Oct 15, 2025Updated 6 months ago