related-sciences / nxontology
NetworkX-based Python library for representing ontologies
โ84Updated last year
Alternatives and similar repositories for nxontology:
Users that are interested in nxontology are comparing it to the libraries listed below
- KGX is a Python library for exchanging Knowledge Graphsโ117Updated last month
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ62Updated this week
- Grounding of biomedical named entities with contextual disambiguationโ41Updated 3 months ago
- python library for working with ontologies and ontology associationsโ124Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ33Updated this week
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ51Updated this week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ180Updated 9 months ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ131Updated this week
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.โ80Updated last year
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ120Updated this week
- mOWL: Machine Learning library with Ontologiesโ63Updated 2 weeks ago
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.โ94Updated last year
- OBO-formatted ontologies โ networkx (Python 3)โ138Updated 6 months ago
- Data transformation framework for LinkML data modelsโ48Updated last month
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated 10 months ago
- Ontology cross-reference and mapping serviceโ18Updated 7 months ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated last month
- Schema and generated objects for biolink data model and upper ontologyโ183Updated 2 weeks ago
- โ24Updated 4 years ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- Data ingest application for Monarch Initiative knowledge graph using Kozaโ15Updated this week
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)โ40Updated this week
- Fast, world class biomedical NERโ81Updated last month
- Toolkit for constructing, analyzing, and visualizing data-driven ontologiesโ18Updated 5 years ago
- NCATS Biomedical Translator Reasoners Standard APIโ36Updated 4 months ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ16Updated 2 weeks ago
- โ128Updated 2 years ago
- Integrated OBO ontology storeโ44Updated 3 months ago
- A Python frontend to (Open Biomedical) Ontologies.โ230Updated this week
- Map your disease and phenotype terms to the Open Targets platform ontologyโ21Updated 2 months ago