related-sciences / nxontologyLinks
NetworkX-based Python library for representing ontologies
☆90Updated 2 years ago
Alternatives and similar repositories for nxontology
Users that are interested in nxontology are comparing it to the libraries listed below
Sorting:
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 3 months ago
- KGX is a Python library for exchanging Knowledge Graphs☆134Updated last month
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆73Updated last week
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.☆101Updated last year
- python library for working with ontologies and ontology associations☆131Updated 9 months ago
- ☆131Updated 2 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆195Updated last year
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated this week
- OBO-formatted ontologies → networkx (Python 3)☆148Updated 7 months ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆200Updated last week
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆43Updated last year
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆17Updated 3 weeks ago
- mOWL: Machine Learning library with Ontologies☆78Updated last month
- A Python frontend to (Open Biomedical) Ontologies.☆246Updated 2 weeks ago
- Fast, world class biomedical NER☆86Updated 8 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆42Updated last week
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆137Updated this week
- Ontology Access Kit: A python library and command line application for working with ontologies☆155Updated 5 months ago
- ☆24Updated 4 years ago
- TypeDB Bio: Biomedical Knowledge Graph☆87Updated 5 months ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- a tool for mapping free-text descriptions of entities to ontology terms☆23Updated last year
- Schema and generated objects for biolink data model and upper ontology☆210Updated last week
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆42Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆52Updated this week
- LLM-driven curation assist tool☆99Updated 3 weeks ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆82Updated 2 years ago
- OntoBrowser is a web-based application for managing ontologies☆44Updated 2 years ago
- The EMBL-EBI Ontology Lookup Service (OLS)☆73Updated this week
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated 2 months ago