biolink / biolink-model-toolkitLinks
A collection of useful python functions for looking up information and working with the Biolink Model
โ24Updated last week
Alternatives and similar repositories for biolink-model-toolkit
Users that are interested in biolink-model-toolkit are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- python library for working with ontologies and ontology associationsโ133Updated 10 months ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ26Updated 3 months ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ74Updated last week
- Integrated OBO ontology storeโ48Updated 2 months ago
- Grounding of biomedical named entities with contextual disambiguationโ45Updated 3 weeks ago
- The EMBL-EBI Ontology Lookup Service (OLS)โ75Updated this week
- KGX is a Python library for exchanging Knowledge Graphsโ136Updated last week
- NCATS Biomedical Translator Reasoners Standard APIโ40Updated last week
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginโ12Updated 9 months ago
- โ24Updated 5 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologiesโ93Updated 2 years ago
- Data ingest application for Monarch Initiative knowledge graph using Kozaโ20Updated last week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ82Updated last month
- Schema and generated objects for biolink data model and upper ontologyโ220Updated last week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated last week
- The symptom ontology was designed around the guiding concept of a symptom being: โA perceived change in function, sensation or appearanceโฆโ44Updated last year
- Summary Dashboard for Open Biological and Biomedical Ontologiesโ24Updated 2 months ago
- The Ontology for Biomedical Investigationsโ97Updated last week
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.โ12Updated this week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ197Updated last year
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ45Updated last week
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.โ82Updated 2 years ago
- Github repo for the Experimental Factor Ontology (EFO)โ62Updated last week
- Data Ingestion Pipeline for Monarchโ57Updated 3 years ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ156Updated 6 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 6 months ago
- Ontology cross-reference and mapping serviceโ20Updated 2 weeks ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ138Updated this week