biolink / biolink-model-toolkitLinks
A collection of useful python functions for looking up information and working with the Biolink Model
☆24Updated last month
Alternatives and similar repositories for biolink-model-toolkit
Users that are interested in biolink-model-toolkit are comparing it to the libraries listed below
Sorting:
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated this week
- python library for working with ontologies and ontology associations☆129Updated 7 months ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆26Updated 2 weeks ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Integrated OBO ontology store☆48Updated 2 months ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆74Updated 2 weeks ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- KGX is a Python library for exchanging Knowledge Graphs☆133Updated 3 weeks ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆81Updated last month
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 3 months ago
- The EMBL-EBI Ontology Lookup Service (OLS)☆72Updated last week
- ☆24Updated 4 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆13Updated 6 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- Medical action ontology☆60Updated last month
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆82Updated 2 years ago
- Schema and generated objects for biolink data model and upper ontology☆207Updated this week
- LLM-driven curation assist tool☆95Updated this week
- Github repo for the Experimental Factor Ontology (EFO)☆60Updated last week
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆42Updated last year
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆44Updated last month
- Ontology Access Kit: A python library and command line application for working with ontologies☆151Updated 4 months ago
- The Ontology for Biomedical Investigations☆91Updated last week
- phenol: Phenotype ontology library☆24Updated 3 weeks ago
- Summary Dashboard for Open Biological and Biomedical Ontologies☆23Updated 3 weeks ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 2 months ago
- Data ingest application for Monarch Initiative knowledge graph using Koza☆19Updated last week
- Ontology cross-reference and mapping service☆19Updated 5 months ago
- NCATS Biomedical Translator Reasoners Standard API☆39Updated this week
- Data Ingestion Pipeline for Monarch☆57Updated 2 years ago