Alternatives and similar repositories for abmap:

Users that are interested in abmap are comparing it to the libraries listed below

• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆105Updated 3 weeks ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆103Updated 3 weeks ago
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆143Updated last year
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆150Updated 2 months ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆96Updated last year
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆54Updated 2 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆88Updated 3 weeks ago
• amyxlu / plaid
  Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompt…
  ☆61Updated 3 weeks ago
• aqlaboratory / genie2
  Protein structure diffusion model for unconditional protein generation and motif scaffolding
  ☆136Updated 6 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆86Updated this week
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆174Updated last month
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆117Updated last year
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆174Updated 8 months ago
• AbSciBio / unlocking-de-novo-antibody-design
  ☆111Updated 5 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆75Updated 2 weeks ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆72Updated 3 years ago
• OpenBioML / protein-lm-scaling
  ☆57Updated 9 months ago
• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆35Updated 3 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆185Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆206Updated 5 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆135Updated 3 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆119Updated 2 years ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆71Updated 5 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆50Updated 4 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆248Updated 11 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆78Updated 5 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆96Updated 3 weeks ago
• Hanziwww / AlphaFold3-GUI
  AFusion: AlphaFold 3 GUI & Toolkit with Visualization
  ☆89Updated last month
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆98Updated 2 months ago