lucidrains / alphagenomeLinks
Implementation of AlphaGenome, Deepmind's updated genomic attention model
☆70Updated 3 months ago
Alternatives and similar repositories for alphagenome
Users that are interested in alphagenome are comparing it to the libraries listed below
Sorting:
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆262Updated 3 weeks ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆192Updated 4 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆84Updated 3 months ago
- Protein language model customized for antibodies☆146Updated 8 months ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆131Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- Inference and numerics for multi-hybrid AI model architectures☆82Updated 3 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆53Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆284Updated 3 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆212Updated 5 months ago
- A fully open source biomolecular structure prediction model based on AlphaFold3☆427Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆97Updated 2 weeks ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆80Updated 5 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆195Updated 5 months ago
- ☆58Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆156Updated 3 months ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆99Updated last month
- Protein structure datasets for machine learning.☆112Updated 7 months ago
- gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 Spotlight)☆221Updated 8 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆120Updated last month
- Primary RNA sequence model☆40Updated last year
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆25Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆218Updated 3 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆90Updated 4 months ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆87Updated 3 years ago
- A Modular Architecture for Deep Learning Systems☆47Updated 6 months ago
- A short course on proteins and protein design aimed at early career students☆160Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆136Updated this week
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago