Alternatives and similar repositories for alphagenome

Users that are interested in alphagenome are comparing it to the libraries listed below

• ElanaPearl / InterPLM
  Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders
  ☆184Updated 5 months ago
• rs239 / abmap
  Protein language model customized for antibodies
  ☆140Updated 3 months ago
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆77Updated last month
• bytedance / dplm
  The Family of Diffusion Protein Language Models (DPLM)
  ☆214Updated last week
• OpenBioML / protein-lm-scaling
  ☆58Updated last year
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆45Updated 11 months ago
• kuleshov-group / caduceus
  Bi-Directional Equivariant Long-Range DNA Sequence Modeling
  ☆195Updated last month
• Zymrael / savanna
  Pretraining infrastructure for multi-hybrid AI model architectures
  ☆173Updated 2 months ago
• instadeepai / bioclip
  Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs
  ☆24Updated last year
• HannesStark / dirichlet-flow-matching
  ☆116Updated last year
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆43Updated last month
• michaelhla / pro-1
  reasoning model trained using GRPO towards rosetta REF2015 for protein stability
  ☆85Updated this week
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆137Updated last month
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆64Updated last month
• AI4PDLab / ProtRL
  ☆69Updated this week
• etowahadams / interprot
  ☆115Updated 2 months ago
• Supercomputing-System-AI-Lab / MegaFold
  ☆37Updated last week
• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆185Updated last month
• microsoft / protein-transfer
  ☆26Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆66Updated 3 weeks ago
• genbio-ai / AIDO
  AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…
  ☆105Updated last week
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆160Updated 2 years ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆36Updated 3 weeks ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆44Updated 4 months ago
• lucidrains / progen
  Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
  ☆113Updated 3 years ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆120Updated 8 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆111Updated 2 months ago
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆157Updated last year
• NVlabs / protcomposer
  ☆44Updated 3 weeks ago
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated 9 months ago