lucidrains / alphagenomeLinks
Implementation of AlphaGenome, Deepmind's updated genomic attention model
☆67Updated last month
Alternatives and similar repositories for alphagenome
Users that are interested in alphagenome are comparing it to the libraries listed below
Sorting:
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆193Updated last week
- Pretraining infrastructure for multi-hybrid AI model architectures☆184Updated 2 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆124Updated 10 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆205Updated 3 months ago
- Protein language model customized for antibodies☆142Updated 6 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆50Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆151Updated last month
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆178Updated 3 months ago
- Primary RNA sequence model☆38Updated last year
- ProtMamba: a homology-aware but alignment-free protein state space model☆78Updated 3 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆254Updated last month
- Inference and numerics for multi-hybrid AI model architectures☆76Updated last month
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆91Updated last month
- A Modular Architecture for Deep Learning Systems☆45Updated 3 months ago
- ☆58Updated last year
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆24Updated last year
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆122Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 Spotlight)☆212Updated 6 months ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆59Updated 7 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆117Updated 4 months ago
- RiboNucleic Acid (RNA) Language Model☆126Updated 3 months ago
- Protein structure datasets for machine learning.☆112Updated 4 months ago
- ☆122Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆211Updated last month
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆87Updated 2 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago
- A generalized computational framework for biomolecular modeling.☆240Updated this week