Implementation of AlphaGenome, Deepmind's updated genomic attention model
☆101Mar 25, 2026Updated 4 months ago
Alternatives and similar repositories for alphagenome
Users that are interested in alphagenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated last month
- Annotated sequence data☆11Feb 2, 2025Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆256Aug 28, 2025Updated 10 months ago
- Analyses related to the Borzoi paper.☆29Dec 14, 2025Updated 7 months ago
- Genomic sequence preprocessing toolkit☆14Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆572Jun 26, 2026Updated last month
- AlphaGenome PyTorch port☆151Updated this week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- Universal Single-Cell Genomics Preprocessing package☆50Updated this week
- deep learning-inspired explainable sequence model for transcription initiation☆106Mar 3, 2025Updated last year
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated last month
- ☆13Apr 23, 2025Updated last year
- Contrastive Reinforcement Learning☆66Apr 4, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆22Updated this week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆80Jun 4, 2026Updated last month
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- Implementation of Recurrent Independent Mechanisms in Pytorch☆27Apr 6, 2026Updated 3 months ago
- Implementation of Strassen attention, from Kozachinskiy et al. of National Center of AI in Chile☆41Jul 8, 2025Updated last year
- Implementation of a transformer for reinforcement learning using `x-transformers`☆72Sep 25, 2025Updated 10 months ago
- Machine learning methods for DNA sequence analysis.☆64Jul 20, 2026Updated last week
- Explorations into NEAT and some of its derivative research☆41Jul 6, 2026Updated 3 weeks ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Apr 1, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of Fast Weight Attention☆33Jun 3, 2026Updated last month
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Implementation of various evolutionary algorithms, starting with evolutionary strategies☆51May 10, 2026Updated 2 months ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- Unofficial implementation of Tiny Recursive Model (TRM), improvement to HRM from Sapient AI, by Alexia Jolicoeur-Martineau☆191Dec 23, 2025Updated 7 months ago
- Biological sequence analysis for the modern age.☆305Jul 19, 2026Updated last week
- A high-performance BigWig and BigBed library in Rust☆118Jul 6, 2026Updated 3 weeks ago
- Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023☆10Mar 23, 2023Updated 3 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implementation of Alphafold 3 from Google Deepmind in Pytorch☆1,677Sep 18, 2025Updated 10 months ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 4 years ago
- Foundation Models for Genomics & Transcriptomics☆901Feb 24, 2026Updated 5 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆334Jun 12, 2026Updated last month
- ☆14Feb 21, 2023Updated 3 years ago
- ☆29Nov 7, 2023Updated 2 years ago
- ☆44May 7, 2026Updated 2 months ago