Alternatives and similar repositories for alphafold-decoded:

Users that are interested in alphafold-decoded are comparing it to the libraries listed below

• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆75Updated 2 weeks ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆124Updated this week
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆90Updated this week
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆141Updated this week
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆108Updated 2 weeks ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆69Updated 5 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆43Updated last month
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆54Updated 2 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆65Updated 5 months ago
• ikalvet / heme_binder_diffusion
  ☆105Updated 3 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆104Updated 2 weeks ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆80Updated 5 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆93Updated last year
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆152Updated 2 months ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆51Updated 3 weeks ago
• liuyf020419 / SCUBA-D
  ☆52Updated 9 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆95Updated 2 years ago
• EvanKomp / aide_predict
  A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn
  ☆10Updated this week
• zhanghaicang / carbonmatrix_public
  ☆105Updated 3 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 2 months ago
• amyxlu / plaid
  Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompt…
  ☆63Updated last month
• Kuhlman-Lab / evopro
  ☆72Updated this week
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆105Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆52Updated last month
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆177Updated 2 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆88Updated 2 weeks ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆98Updated 2 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆134Updated 3 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆45Updated 6 months ago
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆59Updated this week