Hands-on AlphaFold implementation for educational purposes.
☆136Aug 26, 2026Updated 2 months ago
Alternatives and similar repositories for alphafold-decoded
Users that are interested in alphafold-decoded are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆149Jun 16, 2026Updated 4 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated last year
- We believe that under the current technological conditions, protein structure prediction models determine the upper limit of protein desi…☆11Oct 20, 2026Updated 2 weeks ago
- A generalized computational framework for biomolecular modeling.☆460Oct 22, 2026Updated last week
- Local Interaction Score (LIS) for structure prediction analysis☆91Oct 5, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- GPU-accelerated (CUDA) contact molecular surface (CMS) and Lawrence & Colman shape complementarity (SC) for protein design☆32Sep 26, 2026Updated last month
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆96Jun 1, 2026Updated 5 months ago
- ☆19Mar 19, 2026Updated 7 months ago
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆22Aug 13, 2025Updated last year
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated 2 years ago
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆23Oct 26, 2026Updated last week
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ColabFold protocol☆62Oct 17, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Updated this week
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆16May 26, 2026Updated 5 months ago
- ☆18Jul 24, 2026Updated 3 months ago
- composite-objective protein design☆380Updated this week
- A tool for mapping protein-protein, protein-nucleic acid, and antigen-antibody interactions☆14May 14, 2025Updated last year
- A curated list of resources for protein analysis on AWS☆36Jul 8, 2024Updated 2 years ago
- ☆47Sep 16, 2024Updated 2 years ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Jul 2, 2024Updated 2 years ago
- Resources for learning AI-driven protein design☆25Oct 23, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Modelling protein conformations with Alphafold3☆17Oct 27, 2026Updated last week
- MCP server for life-science knowledge graphs☆20Updated this week
- ☆261Sep 22, 2026Updated last month
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆25Aug 25, 2026Updated 2 months ago
- FusionProt: Fusing Sequence and Structural Information for Unified Protein Representation Learning☆18Dec 13, 2025Updated 10 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆20Aug 24, 2024Updated 2 years ago
- random colab notebooks for biology☆25Aug 23, 2025Updated last year
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆169Oct 19, 2026Updated 2 weeks ago
- A fully open source biomolecular structure prediction model based on AlphaFold3☆911Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Oct 26, 2024Updated 2 years ago
- bioinformatics tools running on modal☆161Jun 3, 2026Updated 5 months ago
- Protein prediction models implemented with Modal☆34Updated this week
- ☆24Oct 26, 2026Updated last week
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆43Sep 27, 2024Updated 2 years ago
- ☆52Aug 24, 2026Updated 2 months ago
- Implementation of Active Flow Expansion (ActFlow), preprint: https://arxiv.org/abs/2606.08802☆25Jun 27, 2026Updated 4 months ago