kilianmandon / alphafold-decodedView external linksLinks
Hands-on AlphaFold implementation for educational purposes.
☆102Apr 5, 2025Updated 10 months ago
Alternatives and similar repositories for alphafold-decoded
Users that are interested in alphafold-decoded are comparing it to the libraries listed below
Sorting:
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- mdml: Deep Learning for Molecular Simulations☆50May 17, 2025Updated 8 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 5 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆19Aug 13, 2025Updated 6 months ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 5 months ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Jul 2, 2024Updated last year
- ☆18Jan 14, 2026Updated 3 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆133Nov 11, 2025Updated 3 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆70Jul 2, 2025Updated 7 months ago
- ☆27Aug 8, 2025Updated 6 months ago
- Metrics for our protein design competitions.☆35Nov 1, 2024Updated last year
- ☆74Mar 19, 2025Updated 10 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆18Aug 24, 2024Updated last year
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- ColabFold protocol☆56Oct 17, 2024Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- CryoBoltz code for protein structure prediction with cryo-EM guidance. NeurIPS 2025.☆21Nov 30, 2025Updated 2 months ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆10Jan 25, 2026Updated 2 weeks ago
- ☆536Feb 6, 2025Updated last year
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 3 years ago
- ☆14Oct 5, 2024Updated last year
- Official repository for the ProteinDJ protein design pipeline☆87Jan 21, 2026Updated 3 weeks ago
- ☆29May 31, 2023Updated 2 years ago
- ☆239Updated this week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated 7 months ago
- Metal and Water prediction☆13Feb 5, 2025Updated last year
- ☆146Jul 16, 2025Updated 6 months ago
- ☆21Oct 26, 2024Updated last year
- ☆32Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆117Aug 3, 2025Updated 6 months ago
- bioinformatics tools running on modal☆137Updated this week
- ☆47Sep 16, 2024Updated last year
- ☆10Mar 9, 2024Updated last year
- [Neurips 2025] Official Implementation of ConfRover models☆18Feb 3, 2026Updated last week
- ☆14May 16, 2019Updated 6 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆224Aug 7, 2025Updated 6 months ago
- PyMOL-wasm port's binary and html/javascript code☆33Sep 15, 2025Updated 4 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- ☆116Dec 7, 2022Updated 3 years ago