Alternatives and similar repositories for SyntheMol

Users that are interested in SyntheMol are comparing it to the libraries listed below

• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆115Updated this week
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆96Updated 3 months ago
• jssweller / DrugHIVE
  DrugHIVE: Structure-based drug design with a deep hierarchical generative model
  ☆102Updated 6 months ago
• swansonk14 / admet_ai
  Training and prediction scripts for Chemprop models trained on ADMET datasets
  ☆156Updated 7 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆151Updated last year
• HUBioDataLab / DrugGEN
  Official implementation of DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Ad…
  ☆63Updated last month
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆133Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆94Updated 9 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆214Updated 9 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆117Updated last week
• rxn4chemistry / biocatalysis-model
  RXN for biochemical reactions
  ☆67Updated 2 years ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆91Updated 2 weeks ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆140Updated 2 weeks ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆113Updated 2 months ago
• ELELAB / RosettaDDGPrediction
  ☆65Updated 3 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆205Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆121Updated last month
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆133Updated 3 months ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆118Updated 6 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 9 months ago
• ChatterjeeAyan / AI-Bind
  Interpretable AI pipeline improving binding predictions for novel protein targets and ligands
  ☆29Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆71Updated last week
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆98Updated 7 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆90Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• AlexanderKroll / ESP
  ☆72Updated 8 months ago
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆243Updated last year
• jamesgleave / DD_protocol
  Official repository for the Deep Docking protocol
  ☆119Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆59Updated last year
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆179Updated last month