lasigeBioTM / IHP
Identification of Human Phenotype Entities
☆11Updated 6 years ago
Alternatives and similar repositories for IHP:
Users that are interested in IHP are comparing it to the libraries listed below
- PhenoTagger☆56Updated last year
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- ☆21Updated last month
- A combined deep learning tool for automated recognition of human phenotype ontology☆24Updated 2 years ago
- ☆17Updated last year
- ☆24Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆87Updated last year
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- Retrieve and process PubTator annotations☆44Updated last year
- Python library for work with BioCreative files☆13Updated 7 years ago
- AIONER☆54Updated 9 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆186Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated 3 weeks ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- Python library for extracting HPO encoded phenotypes from text☆29Updated last year
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last month
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated 2 weeks ago
- ☆54Updated 5 years ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆24Updated 2 months ago
- ☆67Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated last week
- ☆32Updated 4 months ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Medical action ontology☆55Updated 2 weeks ago
- A near real-time named-entity recognizer☆59Updated 11 months ago
- Repository for the GA4GH phenopacket schema☆85Updated 7 months ago