Alternatives and similar repositories for Leaf-GP

Users that are interested in Leaf-GP are comparing it to the libraries listed below

• Gregor-Mendel-Institute / aradeepopsis
  A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
  ☆47Updated 6 months ago
• ucdavis-bioinformatics / assemblathon2-analysis
  collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
  ☆23Updated 4 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• futurefanzhang / Adaptation-to-climate-change-of-alfalfa
  This is the script used for analysis the population data of alfalfa
  ☆10Updated last year
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 5 years ago
• RILAB / lab-docs
  The Ross-Ibarra's lab documentation
  ☆26Updated 3 years ago
• timeu / PyGWAS
  ☆24Updated 7 years ago
• XDynames / SAI-app
  A local version of SAI, the automated stomata measuring tool
  ☆24Updated last year
• compbiol / mgra
  ☆20Updated 3 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• gtamazian / chromosomer
  A reference-assisted assembly tool for producing draft chromosome sequences.
  ☆42Updated last year
• dominikgrimm / easyGWASCore
  Computational Framework for Genome-Wide Association Studies and Meta-Studies in C/C++ with Python Interfaces
  ☆11Updated 5 years ago
• SCSLabISU / xPLNet
  An explainable Deep Machine Vision framework for Plant Stress Phenotyping
  ☆15Updated 4 years ago
• LyonsLab / coge
  CoGe (Comparative Genomics) Platform
  ☆46Updated 3 years ago
• evolbioinfo / booster
  ☆28Updated 5 years ago
• MariaNattestad / Nchart
  Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file
  ☆12Updated 8 years ago
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆40Updated 2 months ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆35Updated 2 years ago
• bpucker / PythonTUBS
  Python introduction for life scientists
  ☆46Updated 7 months ago
• MetaSUB / MetaSUB_CAP
  A comprehensive pipeline for short read metagenomic data
  ☆25Updated 5 years ago
• bpucker / MGSE
  Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…
  ☆36Updated 5 months ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆38Updated last year
• hopkinsmarinestation / Population-Genomics-via-RNAseq
  Guide to transcriptome assembly & analysis
  ☆21Updated 8 years ago
• cma2015 / DeepGS
  DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.
  ☆53Updated 4 years ago
• melbournebioinformatics / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…
  ☆34Updated 11 years ago
• ChrisCreevey / clann
  Clann: constructing consensus trees and supertrees from multiple source trees
  ☆18Updated 8 months ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆53Updated last year
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• dib-lab / 2018-ncbi-lineages
  Extract lineage CSVs from NCBI for use with sourmash lca.
  ☆29Updated 2 years ago
• carnegie / PlantClusterFinder
  ☆17Updated 3 weeks ago