CSUBioGroup / DeepPPISPLinks
Protein-protein interaction sites prediction through combining local and global features with deep neural networks
☆54Updated 5 years ago
Alternatives and similar repositories for DeepPPISP
Users that are interested in DeepPPISP are comparing it to the libraries listed below
Sorting:
- ☆53Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Updated 4 years ago
- ☆86Updated 3 years ago
- ☆22Updated 2 years ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆75Updated 3 years ago
- a novel DTA predition method using graph neural network☆74Updated 2 years ago
- MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…☆104Updated 4 years ago
- a deep learning architecture for protein-ligand binding affinity prediction☆76Updated last year
- An evolutionary context-integrated deep learning framework for protein engineering☆64Updated 3 years ago
- ☆35Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆73Updated 4 years ago
- open source repository☆141Updated last year
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆34Updated 5 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Graph Network for protein-protein interface☆120Updated last year
- ☆40Updated last year
- ☆18Updated last year
- A Python 3 version of the protein descriptor package propy☆45Updated 2 years ago
- A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.☆32Updated 2 years ago
- Protein-protein interacting site predictor using deep graph convolutional network☆11Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated 2 years ago
- ☆17Updated 5 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆119Updated 4 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 weeks ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Updated 10 months ago