CSUBioGroup / DeepPPISPLinks
Protein-protein interaction sites prediction through combining local and global features with deep neural networks
☆54Updated 5 years ago
Alternatives and similar repositories for DeepPPISP
Users that are interested in DeepPPISP are comparing it to the libraries listed below
Sorting:
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- ☆52Updated 11 months ago
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Updated 3 years ago
- ☆86Updated 2 years ago
- a deep learning architecture for protein-ligand binding affinity prediction☆74Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 11 months ago
- ☆34Updated 2 years ago
- a novel DTA predition method using graph neural network☆74Updated 2 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆63Updated 3 years ago
- A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.☆32Updated 2 years ago
- ☆20Updated 2 years ago
- ☆17Updated 5 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Updated last year
- ☆20Updated 2 years ago
- open source repository☆138Updated last year
- ☆69Updated 4 years ago
- ☆18Updated last year
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆72Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- ☆25Updated 3 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆73Updated 3 years ago
- Graph Network for protein-protein interface☆120Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆50Updated 8 months ago
- MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…☆102Updated 4 years ago
- Fusion models for Atomic and molecular STructures (FAST)☆91Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- Drug-target binding affinity prediction using representation learning, graph mining, and machine learning☆24Updated 3 years ago