Protein-protein interaction sites prediction through combining local and global features with deep neural networks
☆54Oct 12, 2019Updated 6 years ago
Alternatives and similar repositories for DeepPPISP
Users that are interested in DeepPPISP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆56Aug 3, 2024Updated last year
- Computes a molecular graph for protein structures.☆59Apr 20, 2026Updated last week
- Deep learning protein-protein binding sites prediction☆22Feb 2, 2023Updated 3 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆15Apr 20, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆35Jun 8, 2020Updated 5 years ago
- ☆21Aug 22, 2022Updated 3 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆113Feb 19, 2026Updated 2 months ago
- A fork of Autodock Vina for DeltaVina scoring function☆10Nov 7, 2016Updated 9 years ago
- Fast and easy contact prediction.☆38May 24, 2024Updated last year
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Mar 28, 2021Updated 5 years ago
- ☆29Apr 2, 2026Updated 3 weeks ago
- ☆34Jul 3, 2024Updated last year
- Protein Interface Prediction using Graph Convolutional Networks☆93Oct 2, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Energy-based Graph Convolutional Networks for Scoring Protein Docking Models☆12Aug 31, 2021Updated 4 years ago
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆34Dec 8, 2022Updated 3 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- all-paths graph kernel for protein-protein interaction extraction☆12Apr 22, 2014Updated 12 years ago
- A deep learning model to predict anticancer peptides.☆24Jul 10, 2019Updated 6 years ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆174Sep 8, 2024Updated last year
- Ligand binding site prediction and virtual screening☆12Oct 26, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆22Feb 11, 2025Updated last year
- Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier☆12Jun 18, 2020Updated 5 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated last year
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 3 years ago
- ☆22May 31, 2023Updated 2 years ago
- ☆13May 30, 2019Updated 6 years ago
- a novel DTA predition method using graph neural network☆76Jul 12, 2023Updated 2 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- ☆93Sep 7, 2022Updated 3 years ago
- SPRINT: Scoring PRotein INTeractions☆16Aug 11, 2020Updated 5 years ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- predicting peptide-protein interactions☆141Dec 23, 2023Updated 2 years ago
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated last year
- Model to predict kinase-ligand pKi values.☆12Jul 6, 2023Updated 2 years ago