Protein Interface Prediction using Graph Convolutional Networks
☆93Oct 2, 2020Updated 5 years ago
Alternatives and similar repositories for pipgcn
Users that are interested in pipgcn are comparing it to the libraries listed below
Sorting:
- Computes a molecular graph for protein structures.☆58Feb 23, 2026Updated last week
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated last year
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- Database of Interacting Protein Structures (DIPS)☆104Jan 26, 2024Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆732Jun 19, 2024Updated last year
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Nov 17, 2025Updated 3 months ago
- Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.☆20Jun 22, 2021Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Mar 25, 2019Updated 6 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆54Aug 29, 2025Updated 6 months ago
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- Protein quality assessment using Graph Convolutional Networks☆28Oct 11, 2022Updated 3 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆325Aug 1, 2019Updated 6 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59May 12, 2023Updated 2 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Graph neural network (GNN) for molecular property prediction (3D structure)☆104Nov 28, 2020Updated 5 years ago
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆30Dec 30, 2022Updated 3 years ago
- Recurrent Geometric Network in Pytorch☆28Oct 14, 2020Updated 5 years ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- Tutorial files☆12Aug 7, 2024Updated last year
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆33Dec 8, 2022Updated 3 years ago
- Python 3 implementation of Jinbo Xu's paper "Distance-based protein folding powered by deep learning", PNAS August 20, 2019 116 (34)☆20Aug 2, 2022Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 4 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆21May 19, 2022Updated 3 years ago
- Antibody Binding Mutational Database☆40Apr 10, 2019Updated 6 years ago
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 4 years ago
- This code allows is for diversity picking across multiple different, and potentially overlapping chemical compound classes, while at the …☆12Oct 30, 2020Updated 5 years ago
- This is a code for compound-protein interaction (CPI) prediction based on a graph neural network (GNN) for compounds and a convolutional …☆166Nov 28, 2020Updated 5 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 4 years ago
- Protein-Ligand Interaction Fingerprints☆21Dec 23, 2020Updated 5 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- Repository of all EJP lab computational projects☆15Feb 13, 2026Updated 2 weeks ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated 11 months ago
- A PyTorch framework for prediction of tertiary protein structure☆193Jun 8, 2021Updated 4 years ago
- Energy-based models for atomic-resolution protein conformations☆103Mar 22, 2022Updated 3 years ago