Protein-Protein Docking using Genetic Algorithm
☆20Apr 23, 2026Updated last month
Alternatives and similar repositories for gdock
Users that are interested in gdock are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆24Mar 26, 2020Updated 6 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated last month
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Jun 25, 2022Updated 3 years ago
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Mar 28, 2021Updated 5 years ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Apr 21, 2026Updated last month
- protein docking using a density-based descriptor for atoms charge and dynamics☆14Nov 17, 2022Updated 3 years ago
- An open-source library for the analysis of protein interactions.☆35Dec 5, 2021Updated 4 years ago
- Energy-based Graph Convolutional Networks for Scoring Protein Docking Models☆12Aug 31, 2021Updated 4 years ago
- Learning protein representation for rigid-body docking☆22Nov 2, 2019Updated 6 years ago
- ☆24May 26, 2025Updated last year
- ☆13Oct 3, 2017Updated 8 years ago
- Deep learning protein-protein binding sites prediction☆22Feb 2, 2023Updated 3 years ago
- A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed b…☆10Nov 22, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- This code allows is for diversity picking across multiple different, and potentially overlapping chemical compound classes, while at the …☆12Oct 30, 2020Updated 5 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 10 months ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59May 12, 2023Updated 3 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 8 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 4 years ago
- ☆30Apr 2, 2026Updated last month
- A parallel molecular docking program based on AutoDock Vina☆19Sep 29, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 4 years ago
- Masif seed paper repository☆171Sep 22, 2025Updated 8 months ago
- Integrative modeling of PROTAC-mediated ternary complex☆34May 4, 2022Updated 4 years ago
- ☆13May 26, 2022Updated 4 years ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 4 years ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆41May 6, 2026Updated 3 weeks ago
- ☆16Jun 11, 2021Updated 4 years ago
- ☆21Jun 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆20Nov 22, 2016Updated 9 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆393Sep 16, 2025Updated 8 months ago
- Data and analysis scripts for understanding molecular entropies, including conformer flexibility☆13Mar 29, 2021Updated 5 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- ☆17Dec 21, 2022Updated 3 years ago
- Official repo of the modular BioExcel version of HADDOCK☆243May 19, 2026Updated last week
- Visualization tool for changing networks☆20May 11, 2018Updated 8 years ago