Alternatives and similar repositories for peptimizer

Users that are interested in peptimizer are comparing it to the libraries listed below

• rxn4chemistry / biocatalysis-model
  RXN for biochemical reactions
  ☆69Updated 2 years ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆76Updated 4 months ago
• jproney / AF2Rank
  ☆108Updated 2 years ago
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆71Updated 10 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated last year
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆126Updated last month
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆74Updated 3 years ago
• volkamerlab / opencadd
  A Python library for structural cheminformatics
  ☆101Updated last month
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆78Updated 2 weeks ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆68Updated last month
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆40Updated last year
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆57Updated 8 months ago
• prokia / BioNavi-NP
  Biosynthesis Navigator for Natural Products
  ☆47Updated 2 years ago
• aretasg / dockit
  High-throughput molecular docking with multiple targets and ligands using Vina series engines
  ☆32Updated 4 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆48Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆66Updated 10 months ago
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆52Updated 3 months ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆42Updated 2 years ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆96Updated 9 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 10 months ago
• ELELAB / RosettaDDGPrediction
  ☆66Updated 4 months ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated last year
• openkinome / kinoml
  Structure-informed machine learning for kinase modeling
  ☆55Updated this week
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆58Updated 7 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆96Updated 10 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 4 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆85Updated 4 years ago