Open Source Protein REdesign for You v3
☆58Nov 12, 2025Updated 5 months ago
Alternatives and similar repositories for OSPREY3
Users that are interested in OSPREY3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PCA and normal mode analysis of proteins☆21May 16, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆16May 23, 2019Updated 6 years ago
- Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)☆14Jul 29, 2017Updated 8 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆26Apr 9, 2026Updated last week
- Personal Notes☆23Mar 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Protein structure descriptors and alignment based on 3D Zernike moments.☆39Updated this week
- ☆13Apr 11, 2018Updated 8 years ago
- Javascript package for embedding sequence logos☆19Jun 16, 2025Updated 9 months ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆29Jan 31, 2023Updated 3 years ago
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 2 months ago
- Visualization for TRI materials network data☆17Jul 18, 2023Updated 2 years ago
- 3D pharmacophore signatures and fingerprints☆113May 8, 2025Updated 11 months ago
- RosettaDesign using PyRosetta☆33Aug 22, 2019Updated 6 years ago
- ☆13Dec 5, 2024Updated last year
- SMSD — exact substructure & MCS search for chemical graphs.☆48Updated this week
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆18Nov 19, 2024Updated last year
- Residual Component Analysis☆10Jul 4, 2017Updated 8 years ago
- ☆39Mar 7, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆20Feb 6, 2023Updated 3 years ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- ☆12May 21, 2024Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆134Aug 15, 2023Updated 2 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 3 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆67Apr 16, 2021Updated 5 years ago
- ☆19Jan 24, 2023Updated 3 years ago
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 2 years ago
- Detect, analyze, and visualize protein symmetry☆30Dec 19, 2025Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.☆30Oct 14, 2024Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆45Apr 22, 2023Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- The Visualization of Protein-Ligand Graphs software that powers the PTGL☆16Apr 4, 2024Updated 2 years ago
- Generative deep learning model for inorganic materials☆20Mar 24, 2023Updated 3 years ago
- 2D portraits of 3D protein structures☆27Mar 12, 2026Updated last month
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago