Open Source Protein REdesign for You v3
☆56Nov 12, 2025Updated 4 months ago
Alternatives and similar repositories for OSPREY3
Users that are interested in OSPREY3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆16May 23, 2019Updated 6 years ago
- Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)☆14Jul 29, 2017Updated 8 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆24Jun 10, 2025Updated 9 months ago
- Personal Notes☆23Mar 12, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Protein structure descriptors and alignment based on 3D Zernike moments.☆39Mar 16, 2026Updated last week
- ☆13Apr 11, 2018Updated 7 years ago
- Javascript package for embedding sequence logos☆19Jun 16, 2025Updated 9 months ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆28Jan 31, 2023Updated 3 years ago
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated last month
- Visualization for TRI materials network data☆17Jul 18, 2023Updated 2 years ago
- 3D pharmacophore signatures and fingerprints☆111May 8, 2025Updated 10 months ago
- RosettaDesign using PyRosetta☆33Aug 22, 2019Updated 6 years ago
- ☆13Dec 5, 2024Updated last year
- SMSD is a Java library for detecting Maximum Common Subgraphs (MCS) and substructures between small molecules.☆47Sep 19, 2025Updated 6 months ago
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆17Nov 19, 2024Updated last year
- Residual Component Analysis☆10Jul 4, 2017Updated 8 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆19Feb 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- ☆12May 21, 2024Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆133Aug 15, 2023Updated 2 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 2 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆67Apr 16, 2021Updated 4 years ago
- ☆19Jan 24, 2023Updated 3 years ago
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 2 years ago
- Detect, analyze, and visualize protein symmetry☆30Dec 19, 2025Updated 3 months ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆45Apr 22, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.☆30Oct 14, 2024Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- The Visualization of Protein-Ligand Graphs software that powers the PTGL☆15Apr 4, 2024Updated last year
- Generative deep learning model for inorganic materials☆20Mar 24, 2023Updated 3 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- 2D portraits of 3D protein structures☆27Mar 12, 2026Updated 2 weeks ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago