BioImaging-NKI / Foci-analyzer
ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells
☆16Updated this week
Alternatives and similar repositories for Foci-analyzer
Users that are interested in Foci-analyzer are comparing it to the libraries listed below
Sorting:
- ☆11Updated last month
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ☆12Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 7 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated 3 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆78Updated 3 weeks ago
- Accurate and efficient spot detection for microscopy data☆75Updated 3 weeks ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- StarDist plugin for ImageJ☆29Updated 3 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆68Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- ☆16Updated 9 months ago
- ☆49Updated 2 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated 11 months ago
- ImageJ plugins to run ilastik workflows☆25Updated 3 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Detection, colocalization, and quantification of spots / puncta☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆26Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Browse your OMERO database from within napari.☆37Updated this week
- ☆16Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated last month
- ☆71Updated last month