ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells
☆25May 26, 2026Updated 5 months ago
Alternatives and similar repositories for Foci-analyzer
Users that are interested in Foci-analyzer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆20Mar 11, 2025Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆42Jun 29, 2026Updated 4 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ☆13May 12, 2026Updated 5 months ago
- clathrin-mediated endocytosis analysis☆11Oct 1, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset inte…☆19Oct 26, 2026Updated last week
- An automated imageJ macro which can be used to detect and measure the size of particles in images, maps of images or videos☆12Mar 25, 2024Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Jul 22, 2024Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆103Oct 13, 2026Updated 3 weeks ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- Mitochondria Analyzer☆31Dec 13, 2022Updated 3 years ago
- MiNA (Mitochondrial Network Analysis) is a project aimed at making the analysis and characterization of mitochondrial network morphology …☆34Feb 3, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Easy Volumetric Segmentation with Deep Learning☆32Mar 30, 2026Updated 7 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 8 months ago
- Course and exercises on deep learning for microscopy image analysis☆24Jul 9, 2026Updated 3 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated 2 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- ☆11Aug 15, 2020Updated 6 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated last year
- we collected Gram-stained bacteria images from lower respiratory tract specimens of patients with lung infections in Chinese PLA General…☆12Jan 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fusion of feature pyramids for nucleus segmentation and cell segmentation☆10Sep 15, 2023Updated 3 years ago
- ImageJ macros and scripts written at the imaging facility MRI☆45Oct 27, 2026Updated last week
- Extract surfaces from 3D microscopy images and project them to 2D for analysis and visualization☆12Jul 17, 2026Updated 3 months ago
- Modular image and object analysis workflows for ImageJ/Fiji☆17Updated this week
- Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute☆30Aug 9, 2026Updated 2 months ago
- An OMERO.web app for sharing data and prepare data for web download.☆12Sep 18, 2026Updated last month
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- A simple flow cytometry analyzer GUI.☆28Oct 28, 2026Updated last week
- StarDist plugin for napari☆42Aug 24, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- ☆15Aug 12, 2022Updated 4 years ago
- ☆15Sep 4, 2026Updated 2 months ago
- Analysis of TrackMate XML outputs in R☆17Sep 18, 2026Updated last month
- License & Copyright © 2019 Varun Mannam, University of Notre Dame Licensed under the GPL.☆52Apr 5, 2022Updated 4 years ago
- CSV exporter user script for icscards.nl☆15Jan 14, 2026Updated 9 months ago
- Adaptive Resolution Orientation Space performs multi-orientation analysis across angular resolutions to segment complex filamentous netwo…☆10Aug 20, 2020Updated 6 years ago