BioHPC / MegaRLinks
megaR: An Interactive R Package for Metagenomic Sample Classification and Disease Prediction using Microbiota and Machine Learning
☆9Updated 3 years ago
Alternatives and similar repositories for MegaR
Users that are interested in MegaR are comparing it to the libraries listed below
Sorting:
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- ☆23Updated 5 years ago
- gutSMASH☆54Updated 6 months ago
- Microbiome analysis☆51Updated this week
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆20Updated 10 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆37Updated last week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 weeks ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated 2 weeks ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- R implementation of the LEfSe method☆59Updated 2 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- ☆20Updated 5 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 2 months ago
- Creating plasmid maps inside ggplot.☆87Updated 6 months ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- ☆15Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A microbiome analysis toolkit for R☆23Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- R package for downstream Microbiome analysis☆28Updated 6 months ago