BioHPC / MegaRLinks
megaR: An Interactive R Package for Metagenomic Sample Classification and Disease Prediction using Microbiota and Machine Learning
☆9Updated 3 years ago
Alternatives and similar repositories for MegaR
Users that are interested in MegaR are comparing it to the libraries listed below
Sorting:
- gutSMASH☆53Updated 5 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆20Updated 9 months ago
- Linear Decomposition Model☆24Updated last year
- Microbiome analysis☆51Updated this week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆35Updated this week
- R implementation of the LEfSe method☆59Updated last month
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- Creating plasmid maps inside ggplot.☆87Updated 6 months ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- ☆23Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- ☆20Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- A microbiome analysis toolkit for R☆22Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆47Updated 4 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆56Updated last year