Conda recipes for the bioconda channel.
☆1,793Mar 19, 2026Updated this week
Alternatives and similar repositories for bioconda-recipes
Users that are interested in bioconda-recipes are comparing it to the libraries listed below
Sorting:
- Utilities for building and managing bioconda recipes☆103Mar 4, 2026Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,429Mar 12, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,303Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,143Feb 13, 2026Updated last month
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,863Mar 10, 2026Updated last week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,527Feb 27, 2026Updated 3 weeks ago
- bedtools - the swiss army knife for genome arithmetic☆1,027Mar 11, 2025Updated last year
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,712Mar 22, 2025Updated 11 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆883Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,531Jun 1, 2025Updated 9 months ago
- A DSL for data-driven computational pipelines☆3,325Updated this week
- BWK awk modified for biological data☆638Aug 11, 2022Updated 3 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆530Jan 27, 2026Updated last month
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 7 months ago
- Official git repository for Biopython (originally converted from CVS)☆4,928Updated this week
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- Bioinformatics containers☆779Feb 4, 2026Updated last month
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,027Aug 24, 2024Updated last year
- The next version of bwa-mem☆823Oct 15, 2025Updated 5 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆329Mar 16, 2025Updated last year
- Official code repository for GATK versions 4 and up☆1,916Mar 13, 2026Updated last week
- This is the development home of the workflow management system Snakemake. For general information, see☆2,727Updated this week
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆1,177Updated this week
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,655Mar 5, 2026Updated 2 weeks ago
- GFF and GTF file manipulation and interconversion☆314Jan 26, 2026Updated last month
- tools for working with genome variation graphs☆1,301Updated this week
- Cutadapt removes adapter sequences from sequencing reads☆575Updated this week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆864Feb 8, 2026Updated last month
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆540Mar 9, 2026Updated last week
- Tools for working with SAM/BAM data☆606Dec 22, 2024Updated last year
- Efficient pythonic random access to fasta subsequences☆482Sep 3, 2025Updated 6 months ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- RNA-seq aligner☆2,158Mar 18, 2025Updated last year
- Tool Shed repositories maintained by the Intergalactic Utilities Commission☆197Updated this week
- A fast and sensitive gapped read aligner☆776Mar 7, 2026Updated last week
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- Fast genome and metagenome distance estimation using MinHash☆436Sep 19, 2025Updated 6 months ago
- SRA Tools☆1,313Mar 13, 2026Updated last week