Alternatives and similar repositories for bioconda-recipes

Users that are interested in bioconda-recipes are comparing it to the libraries listed below

• vgteam / vg
  tools for working with genome variation graphs
  ☆1,220Updated this week
• merenlab / anvio
  An analysis and visualization platform for 'omics data
  ☆479Updated this week
• chanzuckerberg / cellxgene
  An interactive explorer for single-cell transcriptomics data
  ☆702Updated this week
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,010Updated 11 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆988Updated 4 months ago
• COMBINE-lab / salmon
  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
  ☆814Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,337Updated this week
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆601Updated last month
• pysam-developers / pysam
  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…
  ☆841Updated last month
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,480Updated 2 months ago
• BioContainers / containers
  Bioinformatics containers
  ☆736Updated 2 months ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆536Updated 2 weeks ago
• galaxyproject / galaxy
  Data intensive science for everyone.
  ☆1,562Updated this week
• shenwei356 / seqkit
  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  ☆1,446Updated 3 weeks ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆726Updated last week
• broadinstitute / picard
  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
  ☆1,022Updated last week
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆478Updated 2 months ago
• broadinstitute / gatk
  Official code repository for GATK versions 4 and up
  ☆1,827Updated this week
• bbuchfink / diamond
  Accelerated BLAST compatible local sequence aligner.
  ☆1,168Updated last week
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆455Updated 2 weeks ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆507Updated 8 months ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆786Updated 3 weeks ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆830Updated last year
• marcelm / cutadapt
  Cutadapt removes adapter sequences from sequencing reads
  ☆554Updated 2 months ago
• galaxyproject / tools-iuc
  Tool Shed repositories maintained by the Intergalactic Utilities Commission
  ☆182Updated this week
• scverse / scanpy
  Single-cell analysis in Python. Scales to >100M cells.
  ☆2,147Updated this week
• chapmanb / bcbb
  Incubator for useful bioinformatics code, primarily in Python and R
  ☆626Updated 6 months ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆919Updated last year
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆464Updated this week
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆751Updated last week