cgreene / awesome-deepbioLinks
A curated list of awesome deep learning applications in the field of computational biology
☆11Updated 8 years ago
Alternatives and similar repositories for awesome-deepbio
Users that are interested in awesome-deepbio are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆82Updated 5 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- ☆81Updated 7 months ago
- Downloader for ENCODE☆32Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- Python API for Xena Hub☆53Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Computational Biology- Spring 2021☆47Updated 3 years ago
- Python biomart API☆66Updated 2 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated 9 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 11 months ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆29Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 9 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 4 months ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago