beaunorgeot / philter_ucsfLinks
clinical free text de-identification software
☆41Updated 7 years ago
Alternatives and similar repositories for philter_ucsf
Users that are interested in philter_ucsf are comparing it to the libraries listed below
Sorting:
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆108Updated last year
- Open source clinical text de-identification☆142Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last month
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆140Updated last year
- ☆55Updated 5 years ago
- ☆66Updated 4 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 5 months ago
- Sample code that demonstrates the use of the NCBO REST services☆43Updated last year
- ☆220Updated 10 months ago
- Public release of the DeepPhe analytic software☆30Updated 2 months ago
- Open or Easy Access Clinical Data Sources for Biomedical Research☆176Updated 8 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated this week
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆47Updated 2 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- ☆16Updated 4 months ago
- Robust de-identification of medical notes using transformer architectures☆55Updated 3 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆163Updated 2 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- ☆98Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆24Updated last year
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- Represent SNOMED CT in a relational database☆83Updated 2 years ago
- Visualization of electronic medical records or other sequence event data.☆93Updated 6 years ago