beaunorgeot / philter_ucsf

Related projects ⓘ

Alternatives and complementary repositories for philter_ucsf

• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆112Updated 3 months ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated last year
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆59Updated 2 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated 10 months ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 5 months ago
• lisavirginia / clinical-abbreviations
  ☆63Updated 3 years ago
• beamandrew / cui2vec
  ☆51Updated 4 years ago
• medspacy / sectionizer
  A rule-based Python module for spitting documents into sections.
  ☆12Updated 4 years ago
• asappresearch / clip
  ☆27Updated 3 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated last year
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆29Updated 6 months ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated this week
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆107Updated 7 months ago
• gmichalo / UmlsBERT
  ☆95Updated 2 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆72Updated last week
• obi-ml-public / ehr_deidentification
  Robust de-identification of medical notes using transformer architectures
  ☆45Updated 2 years ago
• UTHealth-CCB / clamp-support
  Clinical Language Annotation Modeling and Processing toolkit
  ☆16Updated 8 years ago
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆48Updated 5 years ago
• nedap / deidentify
  A Python library to de-identify medical records with state-of-the-art NLP methods.
  ☆120Updated last year
• ebegoli / SynthNotes
  A generator of synthetic psychiatric notes.
  ☆16Updated 4 years ago
• CogStack / CogStack-Pipeline
  Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
  ☆41Updated last year
• rorydavidson / SNOMED-CT-Database
  Represent SNOMED CT in a relational database
  ☆82Updated 2 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 2 years ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆70Updated last year
• uf-hobi-informatics-lab / SDoH_SODA
  ☆17Updated 7 months ago
• zliendo / AI_MedicalNotes
  Automatic classification of medical patient discharge notes into standard disease labels, using deep learning models
  ☆29Updated 5 years ago
• chapmanbe / pyConTextNLP
  ☆98Updated last year
• susom / tide
  ☆12Updated this week
• dermatologist / fhiry
  FHIR to pandas dataframe for data analytics, AI and ML!
  ☆33Updated this week
• OHDSI / Athena
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
  ☆59Updated last month