UMEssen / FHIR-PYrateLinks
FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.
☆71Updated 2 months ago
Alternatives and similar repositories for FHIR-PYrate
Users that are interested in FHIR-PYrate are comparing it to the libraries listed below
Sorting:
- Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.☆111Updated this week
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆48Updated 2 years ago
- FHIRPath implementation in Python.☆68Updated this week
- A rules-based transformation engine that allows exporting data in REDCap as FHIR resources.☆12Updated 2 years ago
- A web application to find patients, build cohorts and visualize health records☆53Updated this week
- FHIR Client for python☆198Updated 2 weeks ago
- Python utilities for working with FHIR, including libraries to build simple, flat FHIR views in BigQuery.☆92Updated 2 months ago
- A version of MIMIC-IV in FHIR☆47Updated 11 months ago
- Converts DICOM Resources to FHIR Resources☆22Updated 4 years ago
- A3 - FHIR-native ETL+Q Prototype☆14Updated 4 years ago
- An ASGI FHIR API framework built on top of FastAPI and FHIR Resources☆46Updated last month
- Winners of the SNOMED CT Entity Linking Challenge☆41Updated last year
- This project provides the source for the SQL on FHIR v2.0 Implementation Guide☆121Updated this week
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- Standardization tool for healthcare data☆54Updated 2 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆42Updated 3 weeks ago
- ☆19Updated 3 months ago
- SQL on FHIR Proposal☆80Updated 2 years ago
- Benchmarking Large Language Models for FHIR☆41Updated 2 weeks ago
- CQF Clinical Reasoning on FHIR for Java☆42Updated this week
- Convert FHIR StructureDefinition into Python type annotations☆21Updated 9 months ago
- Main OMOPonFHIR Settings☆45Updated 3 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆84Updated 3 weeks ago
- ☆44Updated 2 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated last year
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆51Updated last week
- GoFSH is a FHIR Shorthand (FSH) decompiler, able to convert formal FHIR definitions from JSON/XML to FSH.☆37Updated 2 weeks ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- FHIR Clinical Reasoning Module Server☆67Updated last month
- Snolytical - Health Data Analytics Demonstrator☆49Updated 5 months ago