A python package for removing duplicate text in clinical notes or other documents
☆39Aug 6, 2020Updated 6 years ago
Alternatives and similar repositories for bloatectomy
Users that are interested in bloatectomy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆30Nov 18, 2017Updated 8 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆100Mar 19, 2026Updated 6 months ago
- This repository contains the complete source code of the MedTAG annotation tool. MedTAG is a biomedical annotation tool for tagging biome…☆12Jan 1, 2023Updated 3 years ago
- Cross-domain data integration for named entity disambiguation in biomedical text☆11Dec 15, 2021Updated 4 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32May 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆491Jul 18, 2024Updated 2 years ago
- Resources for the Society of Critical Care Medicine (SCCM) Datathon☆25Sep 24, 2024Updated last year
- Efficient Symptom Inquiring and Diagnosis via Adaptive Alignment of Reinforcement Learning and Classification [AI in Medicine Journal]☆14May 20, 2022Updated 4 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆99Jul 31, 2024Updated 2 years ago
- Code that drives the public web-based tools for the Media Cloud Online News Archive and Directory.☆12Updated this week
- Developer project for getting basic API integrations working in under 5 minutes☆11May 22, 2026Updated 3 months ago
- Brain imaging workshops☆14Apr 27, 2019Updated 7 years ago
- Quantifying biases in BERT embeddings pretrained on MIMIC-III clinical notes☆26Mar 26, 2021Updated 5 years ago
- This repository contains a corpus of medical case reports with entity and relation annotations in BioC format.☆19Jan 16, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A distributed version of the sparse multi-output Gaussian process framework integrating python and C++.☆30Feb 21, 2018Updated 8 years ago
- DeepDive Biomedical Tools☆15Apr 3, 2017Updated 9 years ago
- ☆18Oct 30, 2020Updated 5 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Nov 20, 2020Updated 5 years ago
- Converting irregularly spaced time series, such as eletronic health records, into dataframes for tabular classification.☆20Jun 17, 2025Updated last year
- Deep learning model for sepsis prediction using high-frequency data☆18May 5, 2019Updated 7 years ago
- ☆12May 23, 2018Updated 8 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆19May 16, 2019Updated 7 years ago
- Zero-shot clinical trial matching with LLMs☆19Mar 1, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Serverless Text Annotation Tool for Corpus Development☆64Feb 19, 2025Updated last year
- UMLS to SNOMED CT and ICD-10-CM mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED …☆16Feb 11, 2026Updated 7 months ago
- A Python library to load and analyze the MIMIC III Critical Care Database☆31Jul 16, 2026Updated 2 months ago
- ☆71Feb 27, 2021Updated 5 years ago
- Custom Keras layers for implementing multi-dimensional recurrent neural networks (MDRNNs) described in Alex Graves's paper https://arxiv.…☆10Apr 27, 2020Updated 6 years ago
- ☆53May 2, 2021Updated 5 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- Originally developed for FHIR DevDays 2020☆11May 5, 2021Updated 5 years ago
- circEWS public code☆79Oct 30, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆18Jul 31, 2019Updated 7 years ago
- ☆12Dec 19, 2016Updated 9 years ago
- Access the Congress.gov API☆21Jun 26, 2026Updated 2 months ago
- Code for the EMNLP paper "Improving Detection and Categorization of Task-relevant Utterances through Integration of Discourse Structure a…☆12Nov 23, 2022Updated 3 years ago
- BV2BIDS is a command line tool that creates the EEG-BIDS folder hierarchy from BVCD files.☆10Mar 9, 2023Updated 3 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated 2 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆28Dec 25, 2021Updated 4 years ago