MIT-LCP / bloatectomyLinks
A python package for removing duplicate text in clinical notes or other documents
☆37Updated 4 years ago
Alternatives and similar repositories for bloatectomy
Users that are interested in bloatectomy are comparing it to the libraries listed below
Sorting:
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated 3 weeks ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- ☆29Updated 3 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆66Updated 2 months ago
- Blog post on Medium☆49Updated 2 years ago
- ☆61Updated 2 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- Med-BERT, contextualized embedding model for structured EHR data☆290Updated last year
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated 2 weeks ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated this week
- source codes based on PyTorch to analyze EHR☆142Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated last week
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆30Updated last year
- ☆39Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 3 weeks ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated 6 months ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- Mapping the MIMIC-III database to the OMOP schema☆137Updated last year
- Python module to parse UMLS source files☆19Updated 2 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- ☆38Updated 3 years ago
- ☆23Updated 2 years ago
- all scripts used in gatortron project☆121Updated last year
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆50Updated 3 years ago