MIT-LCP / bloatectomy
A python package for removing duplicate text in clinical notes or other documents
☆36Updated 4 years ago
Alternatives and similar repositories for bloatectomy:
Users that are interested in bloatectomy are comparing it to the libraries listed below
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- ☆29Updated 3 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 5 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆44Updated last year
- ☆38Updated 3 years ago
- ☆59Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated this week
- Patient Code & Text Representation Learning☆20Updated last year
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Updated 2 years ago
- Blog post on Medium☆49Updated 2 years ago
- Python module to parse UMLS source files☆19Updated 2 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆38Updated 3 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆51Updated last week
- A simple set of MEDS polars-based ETL and transformation functions☆29Updated this week
- ☆98Updated 3 years ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 5 years ago
- APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models☆21Updated 3 weeks ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆48Updated 3 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- ☆53Updated 5 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated last week
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆59Updated last year