A Python library to de-identify medical records with state-of-the-art NLP methods.
☆142Nov 17, 2025Updated 3 months ago
Alternatives and similar repositories for deidentify
Users that are interested in deidentify are comparing it to the libraries listed below
Sorting:
- OpenEHR library implementing ADL 2, AOM 2 and RM 1.0.4☆16Jul 11, 2019Updated 6 years ago
- Medical Text Mining and Information Extraction with spaCy☆438Nov 1, 2022Updated 3 years ago
- ☆16Updated this week
- Transformers for Clinical NLP☆27Aug 6, 2025Updated 6 months ago
- Library for clinical NLP with spaCy.☆634Aug 4, 2025Updated 6 months ago
- Tools for de-identifying medical records on Google Cloud Platform.☆50Jan 23, 2020Updated 6 years ago
- Anonymize Medical Documents using LLMs☆63Sep 2, 2024Updated last year
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆18Jun 7, 2024Updated last year
- System for Medical Concept Extraction and Linking☆433Aug 12, 2024Updated last year
- The iCRF Generator: Generating interoperable electronic case report forms using online codebooks☆13Feb 19, 2026Updated last week
- GenericCDSS is a web-based application, which provides the main dashboard where professionals (e.g, practitioners, nurses) can follow all…☆42Dec 18, 2018Updated 7 years ago
- ☆11Nov 19, 2020Updated 5 years ago
- Disambiguating biomedical and clinical concepts with word embeddings☆14Apr 17, 2018Updated 7 years ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 3 years ago
- Interactive Graphic for Exploring Liver Function Data in Clinical Trials☆11Mar 4, 2023Updated 2 years ago
- A curated list of awesome resources at the intersection of healthcare and AI☆71Sep 22, 2023Updated 2 years ago
- 👥 An R package for deidentifying datasets that may contain personally identifiable information (PII)☆30Feb 12, 2019Updated 7 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Nov 9, 2021Updated 4 years ago
- A small python package that allows the user to look up common medical abbreviations.☆12Apr 19, 2022Updated 3 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83May 24, 2025Updated 9 months ago
- init☆13Dec 4, 2024Updated last year
- Medical Concept Annotation Tool☆522Jul 25, 2025Updated 7 months ago
- Leveraging☆13Dec 7, 2023Updated 2 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,925Dec 4, 2025Updated 2 months ago
- ☆13Oct 20, 2022Updated 3 years ago
- tool for generating openEHR compositions from other formats☆16Feb 20, 2025Updated last year
- Simple and powerful mock data generation using pydantic or dataclasses☆16Apr 3, 2023Updated 2 years ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.☆14Aug 7, 2019Updated 6 years ago
- Repository for managing python tools that model standoff annotations for i2b2 2014 challenge☆14May 12, 2015Updated 10 years ago
- Charlson Comorbidity Index Regression using Clinical Notes☆10Jul 26, 2018Updated 7 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Jun 25, 2025Updated 8 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆101Apr 24, 2024Updated last year
- A simple python package for retrieving data from an openEHR server through AQL queries and its REST API☆17Sep 10, 2020Updated 5 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- Toolkit for a learning health system☆26Jan 12, 2026Updated last month
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71May 5, 2025Updated 9 months ago
- Createdefine.xml, SDTM, and ADaM expors for FDA submission☆17Oct 5, 2022Updated 3 years ago
- Hebrew PHI identification and redaction toolkit☆20Mar 21, 2024Updated last year