A Python library to de-identify medical records with state-of-the-art NLP methods.
☆148Nov 17, 2025Updated 7 months ago
Alternatives and similar repositories for deidentify
Users that are interested in deidentify are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust de-identification of medical notes using transformer architectures☆62Jun 27, 2022Updated 4 years ago
- Deduce: de-identification method for Dutch medical text☆66Feb 10, 2026Updated 4 months ago
- init☆13Dec 4, 2024Updated last year
- Medical Text Mining and Information Extraction with spaCy☆438Nov 1, 2022Updated 3 years ago
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆18Jun 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Expert-Curated Oncology Reports to Advance Language Model Inference☆34Apr 17, 2024Updated 2 years ago
- Library for clinical NLP with spaCy.☆666Jun 4, 2026Updated 3 weeks ago
- System for Medical Concept Extraction and Linking☆445Aug 12, 2024Updated last year
- ☆19Apr 22, 2026Updated 2 months ago
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆107Nov 24, 2025Updated 7 months ago
- ☆11Nov 19, 2020Updated 5 years ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.☆15Aug 7, 2019Updated 6 years ago
- Transformers for Clinical NLP☆29Apr 17, 2026Updated 2 months ago
- 👥 An R package for deidentifying datasets that may contain personally identifiable information (PII)☆30Feb 12, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆224Dec 11, 2024Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆84May 24, 2025Updated last year
- Anonymize Medical Documents using LLMs☆70Sep 2, 2024Updated last year
- ☆17Oct 24, 2020Updated 5 years ago
- spaCy pipeline object for negating concepts in text☆281Apr 20, 2026Updated 2 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆102Apr 24, 2024Updated 2 years ago
- Code and Word2Vec embeddings of LOINC codes for KDD 2019 DSHealth paper "Evaluation of Embeddings of Laboratory Test Codes for Patients a…☆11Jun 13, 2024Updated 2 years ago
- GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.☆10Oct 20, 2023Updated 2 years ago
- Open source clinical text de-identification☆158Aug 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Template for multi-modal machine learning in healthcare using Kedro. Combine reports, tabular data and images using various fusion method…☆24Apr 3, 2026Updated 2 months ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,970Dec 4, 2025Updated 6 months ago
- The iCRF Generator: Generating interoperable electronic case report forms using online codebooks☆13Apr 10, 2026Updated 2 months ago
- Privacy-preserving representations of training data for de-identification☆17Apr 21, 2026Updated 2 months ago
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated 11 months ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆345Nov 9, 2021Updated 4 years ago
- Repository of OHDSI Collaborative Research Protocols☆42Apr 25, 2023Updated 3 years ago
- A small python package that allows the user to look up common medical abbreviations.☆13Apr 19, 2022Updated 4 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Jun 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆64Jul 4, 2023Updated 2 years ago
- Oncology Working Group Repository☆64May 8, 2026Updated last month
- ☆22Dec 8, 2022Updated 3 years ago
- De-identification of Protected Health Information according to HIPAA Privacy Rule☆41May 30, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. depmixS4 — Dependent Mixture Models - Hidden Markov Models of GLMs and Oth…☆12Jun 17, 2026Updated 2 weeks ago
- ☆18Oct 30, 2020Updated 5 years ago
- A rule-based Python module for spitting documents into sections.☆12Nov 14, 2020Updated 5 years ago