Alternatives and similar repositories for fa2_modified

Users that are interested in fa2_modified are comparing it to the libraries listed below

• maiziezhoulab / BenchmarkST
  Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
  ☆20Updated 7 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆57Updated last month
• jranek / delve
  Feature selection for preserving biological trajectories in single-cell data
  ☆19Updated last month
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 10 months ago
• BrainStOrmics / Spaco
  Spatially constrained color profiling for visualizing single-cell resolution spatial data
  ☆26Updated 9 months ago
• prabhakarlab / Banksy_py
  ☆57Updated 7 months ago
• dpeerlab / wishbone
  Wishbone is an algorithm to align cells along developmental trajectories with branches
  ☆18Updated 5 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆38Updated last week
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated last year
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated last month
• klarman-cell-observatory / forceatlas2
  Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d
  ☆22Updated 5 years ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆48Updated last month
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 8 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆31Updated 3 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆47Updated 8 months ago
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated last month
• LankyCyril / pyvenn
  Python module for plotting Venn diagrams of 2..6 sets
  ☆127Updated 3 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• satijalab / panhumanpy
  ☆17Updated 2 months ago
• theislab / ncem_tutorials
  ☆13Updated 2 years ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 8 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆33Updated 8 months ago
• gitter-lab / SINGE
  Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
  ☆11Updated last year
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 2 years ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆63Updated 2 weeks ago
• PeterZZQ / CellPath
  ☆21Updated 3 years ago
• LiHongCSBLab / SOAPy
  ☆31Updated 4 months ago
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆24Updated 3 months ago