LankyCyril / pyvenn

Related projects: ⓘ

• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆134Updated 2 months ago
• jnothman / UpSetPlot
  Draw UpSet plots with Matplotlib
  ☆321Updated 4 months ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆136Updated 2 months ago
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆154Updated last week
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆96Updated 5 years ago
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆113Updated 2 weeks ago
• tctianchi / pyvenn
  2 ~ 6 sets venn diagram for python
  ☆310Updated 4 months ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆128Updated last month
• guma44 / GEOparse
  Python library to access Gene Expression Omnibus Database (GEO)
  ☆137Updated last month
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆43Updated 3 months ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆67Updated last year
• cmap / cmapPy
  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
  ☆124Updated 2 years ago
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆278Updated 2 months ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆125Updated this week
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆192Updated 2 months ago
• baryshnikova-lab / safepy
  Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
  ☆38Updated 7 months ago
• CIMCB / MetabWorkflowTutorial
  https://cimcb.github.io/MetabWorkflowTutorial/
  ☆26Updated 2 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆56Updated this week
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆291Updated 2 weeks ago
• Center-for-Health-Data-Science / PythonTsunami
  An introductory course to Python by the Center of Health Data Science (University of Copenhagen)
  ☆14Updated this week
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆207Updated 3 months ago
• harryhaller001 / keggtools
  Library for KEGG pathway enrichment analysis
  ☆13Updated last year
• reneshbedre / bioinfokit
  Bioinformatics data analysis and visualization toolkit
  ☆334Updated 3 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆224Updated 2 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆54Updated 4 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 2 years ago
• scverse / muon
  muon is a multimodal omics Python framework
  ☆209Updated 2 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆82Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated 11 months ago
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆115Updated last year