AlexandrovLab / SigProfilerExtractorRLinks
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use o…
☆15Updated last year
Alternatives and similar repositories for SigProfilerExtractorR
Users that are interested in SigProfilerExtractorR are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆25Updated last month
- Utility functions for FACETS☆39Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- A tidy interface for coverage analysis☆30Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆38Updated 4 years ago
- R package wrapping bedtools☆42Updated 5 months ago
- workshop website on readthedocs☆19Updated last week
- An R package to analyze single-cell V(D)J data☆28Updated last year
- An R interface to the MEME Suite☆52Updated 2 months ago
- DriverPower☆26Updated 7 months ago
- ☆28Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- ☆13Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Rocking R at UMCCR☆10Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr …☆15Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 3 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Summer school course materials collection☆27Updated 7 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year