AlexandrovLab / SigProfilerExtractorR
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use o…
☆15Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for SigProfilerExtractorR
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 6 months ago
- An R package to time somatic mutations☆60Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated last year
- ☆13Updated 7 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- Utility functions for FACETS☆34Updated 8 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 5 years ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- An R interface to the MEME Suite☆46Updated last month
- An R wrapper for running the SigProfilerPlotting framework☆10Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆14Updated 3 years ago
- Identify and correct invalid gene symbols☆55Updated last week
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 11 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- ☆21Updated 3 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated 3 weeks ago
- RNA-seq Quantification of Alternative Polyadenylation☆43Updated last year
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated this week
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆24Updated 3 years ago
- Summer school course materials collection☆25Updated 6 years ago
- ☆12Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago